Human (GRCh38.p14)
Description

VPS53 subunit of GARP complex [Source:HGNC Symbol;Acc:HGNC:25608]

Gene Synonyms

FLJ10979, HCCS1

Location
About this transcript

This transcript has 8 exons, is associated with 16015 variant alleles and maps to 394 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000437048.7VPS53-20413089832aaENSP00000401435.2
 
Protein coding
CCDS45558Q5VIR6-4 NM_001128159.3MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000681160.1VPS53-25113499709aaENSP00000504905.1
 
Protein coding
A0A7P0Z400 -GENCODE basic
ENST00000680970.1VPS53-2433813106aaENSP00000505263.1
 
Protein coding
A0A7P0T8V9 -GENCODE basic
ENST00000575100.2VPS53-2173402133aaENSP00000505967.1
 
Protein coding
A0A7P0TA41 -GENCODE basicTSL:NA
ENST00000571805.6VPS53-2113070699aaENSP00000459312.1
 
Protein coding
CCDS92214Q5VIR6-1 -GENCODE basicTSL:1
ENST00000576019.6VPS53-2192939203aaENSP00000461429.2
 
Protein coding
I3L4P9 -GENCODE basicTSL:3
ENST00000680241.1VPS53-2332882166aaENSP00000505475.1
 
Protein coding
A0A7P0T9B6 -GENCODE basic
ENST00000681510.1VPS53-2602856782aaENSP00000505594.1
 
Protein coding
A0A7P0T9B2 -GENCODE basic
ENST00000680069.1VPS53-2302729672aaENSP00000505145.1
 
Protein coding
Q5VIR6-3 -GENCODE basic
ENST00000680128.1VPS53-2322716631aaENSP00000506159.1
 
Protein coding
A0A7P0TAK4 -GENCODE basic
ENST00000291074.10VPS53-2012695670aaENSP00000291074.5
 
Protein coding
CCDS10995Q5VIR6-2 -GENCODE basicTSL:1
ENST00000681096.1VPS53-2462694546aaENSP00000506052.1
 
Protein coding
A0A7P0TA79 -GENCODE basic
ENST00000574029.6VPS53-216269081aaENSP00000459159.2
 
Protein coding
I3L1W6 -GENCODE basicTSL:4
ENST00000681317.1VPS53-2562671680aaENSP00000505190.1
 
Protein coding
A0A7P0T8P7 -GENCODE basic
ENST00000681133.1VPS53-2492269422aaENSP00000506475.1
 
Protein coding
A0A7P0TB80 -GENCODE basic
ENST00000681917.1VPS53-2702241655aaENSP00000505944.1
 
Protein coding
A0A7P0TAE0 -GENCODE basic
ENST00000679361.1VPS53-2212237673aaENSP00000504978.1
 
Protein coding
A0A7P0T874 -GENCODE basic
ENST00000681154.1VPS53-2502161644aaENSP00000505866.1
 
Protein coding
A0A7P0T9V8 -GENCODE basic
ENST00000679680.1VPS53-2242155372aaENSP00000506269.1
 
Protein coding
A0A7P0TB16 -GENCODE basic
ENST00000681902.1VPS53-2692149643aaENSP00000505328.1
 
Protein coding
A0A7P0Z461 -GENCODE basic
ENST00000680704.1VPS53-2392125572aaENSP00000506453.1
 
Protein coding
A0A7P0Z4K0 -CDS 3' incomplete
ENST00000572334.7VPS53-2131961572aaENSP00000506188.1
 
Protein coding
A0A7P0Z4K0 -TSL:5CDS 3' incomplete
ENST00000679961.1VPS53-2281619135aaENSP00000505902.1
 
Protein coding
A0A7P0T9X9 -GENCODE basic
ENST00000681120.1VPS53-248149980aaENSP00000506067.1
 
Protein coding
A0A7P0TA82 -GENCODE basic
ENST00000680114.1VPS53-2311392464aaENSP00000505327.1
 
Protein coding
A0A7P0T8V1 -CDS 5' and 3' incomplete
ENST00000679865.1VPS53-226138778aaENSP00000504898.1
 
Protein coding
A0A7P0T804 -GENCODE basic
ENST00000571456.2VPS53-210136983aaENSP00000506589.1
 
Protein coding
A0A7P0TBG3 -GENCODE basicTSL:3
ENST00000401468.7VPS53-2031269422aaENSP00000384294.3
 
Protein coding
E7EVT8 -GENCODE basicTSL:1
ENST00000681295.1VPS53-2551264104aaENSP00000506514.1
 
Protein coding
A0A7P0Z4M8 -GENCODE basic
ENST00000570650.2VPS53-2081050342aaENSP00000458651.2
 
Protein coding
I3L184 -TSL:2CDS 5' incomplete
ENST00000681858.1VPS53-2661012233aaENSP00000505044.1
 
Protein coding
A0A7P0T8A5 -GENCODE basic
ENST00000681103.1VPS53-247926242aaENSP00000505892.1
 
Protein coding
A0A7P0TA53 -GENCODE basic
ENST00000679817.1VPS53-225589109aaENSP00000505032.1
 
Protein coding
A0A7P0T8D0 -GENCODE basic
ENST00000681661.1VPS53-2646682337aaENSP00000506596.1
 
Nonsense mediated decay
A0A7P0Z4Q7 --
ENST00000680872.1VPS53-2405413216aaENSP00000506605.1
 
Nonsense mediated decay
A0A7P0TBJ8 --
ENST00000680641.1VPS53-2364536119aaENSP00000505237.1
 
Nonsense mediated decay
A0A7P0T8K1 --
ENST00000680465.1VPS53-2353235832aaENSP00000505997.1
 
Nonsense mediated decay
CCDS45558Q5VIR6-4 --
ENST00000573028.5VPS53-2153204216aaENSP00000458311.1
 
Nonsense mediated decay
I3L0S6 -TSL:2
ENST00000681478.1VPS53-2593157119aaENSP00000505041.1
 
Nonsense mediated decay
A0A7P0T8K1 --
ENST00000681946.1VPS53-2722973337aaENSP00000505563.1
 
Nonsense mediated decay
A0A7P0Z4Q7 --
ENST00000681943.1VPS53-2712546253aaENSP00000504889.1
 
Nonsense mediated decay
A0A7P0T805 -CDS 5' incomplete
ENST00000576149.5VPS53-220244451aaENSP00000505114.1
 
Nonsense mediated decay
A0A7P0T8A9 -TSL:5
ENST00000572259.2VPS53-2121925109aaENSP00000505287.1
 
Nonsense mediated decay
A0A7P0T8S5 -TSL:3
ENST00000389040.9VPS53-2021903547aaENSP00000373692.5
 
Nonsense mediated decay
F6VX93 -TSL:1
ENST00000681050.1VPS53-2451520237aaENSP00000506640.1
 
Nonsense mediated decay
A0A7P0TBK3 -CDS 5' incomplete
ENST00000681830.1VPS53-265141597aaENSP00000505322.1
 
Nonsense mediated decay
A0A7P0T8V2 -CDS 5' incomplete
ENST00000679959.1VPS53-2271399293aaENSP00000506180.1
 
Nonsense mediated decay
A0A7P0TAF8 -CDS 5' incomplete
ENST00000575207.6VPS53-2181356133aaENSP00000504867.1
 
Nonsense mediated decay
A0A7P0T7U9 -TSL:4
ENST00000681229.1VPS53-2541261136aaENSP00000505837.1
 
Nonsense mediated decay
A0A7P0T9Z7 --
ENST00000681423.1VPS53-2571057117aaENSP00000505115.1
 
Nonsense mediated decay
A0A7P0T8I9 --
ENST00000681866.1VPS53-2673892No protein-
 
Protein coding CDS not defined
---
ENST00000681217.1VPS53-2533785No protein-
 
Protein coding CDS not defined
---
ENST00000679447.1VPS53-2223546No protein-
 
Protein coding CDS not defined
---
ENST00000680958.1VPS53-2421872No protein-
 
Protein coding CDS not defined
---
ENST00000681578.1VPS53-2621870No protein-
 
Protein coding CDS not defined
---
ENST00000680660.1VPS53-2371563No protein-
 
Protein coding CDS not defined
---
ENST00000681570.1VPS53-2611370No protein-
 
Protein coding CDS not defined
---
ENST00000572607.2VPS53-214890No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000679978.1VPS53-229816No protein-
 
Protein coding CDS not defined
---
ENST00000570510.6VPS53-207570No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000679468.1VPS53-223559No protein-
 
Protein coding CDS not defined
---
ENST00000681205.1VPS53-252506No protein-
 
Protein coding CDS not defined
---
ENST00000541903.7VPS53-205490No protein-
 
Protein coding CDS not defined
--TSL:1
ENST00000680944.1VPS53-2416890No protein-
 
Retained intron
---
ENST00000570359.1VPS53-2062781No protein-
 
Retained intron
--TSL:NA
ENST00000681035.1VPS53-2442691No protein-
 
Retained intron
---
ENST00000681897.1VPS53-2682644No protein-
 
Retained intron
---
ENST00000680702.1VPS53-2382403No protein-
 
Retained intron
---
ENST00000680274.1VPS53-2341967No protein-
 
Retained intron
---
ENST00000681600.1VPS53-2631782No protein-
 
Retained intron
---
ENST00000681442.1VPS53-258957No protein-
 
Retained intron
---
ENST00000570771.1VPS53-209366No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 8, Coding exons: 6, Transcript length: 1,520 bps, Translation length: 237 residues

Incomplete CDS

CDS 5' incomplete

Version

ENST00000681050.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

inferred transcript model