Human (GRCh38.p14)
Description

VPS53 subunit of GARP complex [Source:HGNC Symbol;Acc:HGNC:25608]

Gene Synonyms

FLJ10979, HCCS1

Location
About this transcript

This transcript has 13 exons, is associated with 63668 variant alleles and maps to 330 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000437048.7VPS53-20413089832aaENSP00000401435.2
 
Protein coding
CCDS45558Q5VIR6-4 NM_001128159.3MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000681160.1VPS53-25113499709aaENSP00000504905.1
 
Protein coding
A0A7P0Z400 -GENCODE basic
ENST00000680970.1VPS53-2433813106aaENSP00000505263.1
 
Protein coding
A0A7P0T8V9 -GENCODE basic
ENST00000575100.2VPS53-2173402133aaENSP00000505967.1
 
Protein coding
A0A7P0TA41 -GENCODE basicTSL:NA
ENST00000571805.6VPS53-2113070699aaENSP00000459312.1
 
Protein coding
CCDS92214Q5VIR6-1 -GENCODE basicTSL:1
ENST00000576019.6VPS53-2192939203aaENSP00000461429.2
 
Protein coding
I3L4P9 -GENCODE basicTSL:3
ENST00000680241.1VPS53-2332882166aaENSP00000505475.1
 
Protein coding
A0A7P0T9B6 -GENCODE basic
ENST00000681510.1VPS53-2602856782aaENSP00000505594.1
 
Protein coding
A0A7P0T9B2 -GENCODE basic
ENST00000680069.1VPS53-2302729672aaENSP00000505145.1
 
Protein coding
Q5VIR6-3 -GENCODE basic
ENST00000680128.1VPS53-2322716631aaENSP00000506159.1
 
Protein coding
A0A7P0TAK4 -GENCODE basic
ENST00000291074.10VPS53-2012695670aaENSP00000291074.5
 
Protein coding
CCDS10995Q5VIR6-2 -GENCODE basicTSL:1
ENST00000681096.1VPS53-2462694546aaENSP00000506052.1
 
Protein coding
A0A7P0TA79 -GENCODE basic
ENST00000574029.6VPS53-216269081aaENSP00000459159.2
 
Protein coding
I3L1W6 -GENCODE basicTSL:4
ENST00000681317.1VPS53-2562671680aaENSP00000505190.1
 
Protein coding
A0A7P0T8P7 -GENCODE basic
ENST00000681133.1VPS53-2492269422aaENSP00000506475.1
 
Protein coding
A0A7P0TB80 -GENCODE basic
ENST00000681917.1VPS53-2702241655aaENSP00000505944.1
 
Protein coding
A0A7P0TAE0 -GENCODE basic
ENST00000679361.1VPS53-2212237673aaENSP00000504978.1
 
Protein coding
A0A7P0T874 -GENCODE basic
ENST00000681154.1VPS53-2502161644aaENSP00000505866.1
 
Protein coding
A0A7P0T9V8 -GENCODE basic
ENST00000679680.1VPS53-2242155372aaENSP00000506269.1
 
Protein coding
A0A7P0TB16 -GENCODE basic
ENST00000681902.1VPS53-2692149643aaENSP00000505328.1
 
Protein coding
A0A7P0Z461 -GENCODE basic
ENST00000680704.1VPS53-2392125572aaENSP00000506453.1
 
Protein coding
A0A7P0Z4K0 -CDS 3' incomplete
ENST00000572334.7VPS53-2131961572aaENSP00000506188.1
 
Protein coding
A0A7P0Z4K0 -TSL:5CDS 3' incomplete
ENST00000679961.1VPS53-2281619135aaENSP00000505902.1
 
Protein coding
A0A7P0T9X9 -GENCODE basic
ENST00000681120.1VPS53-248149980aaENSP00000506067.1
 
Protein coding
A0A7P0TA82 -GENCODE basic
ENST00000680114.1VPS53-2311392464aaENSP00000505327.1
 
Protein coding
A0A7P0T8V1 -CDS 5' and 3' incomplete
ENST00000679865.1VPS53-226138778aaENSP00000504898.1
 
Protein coding
A0A7P0T804 -GENCODE basic
ENST00000571456.2VPS53-210136983aaENSP00000506589.1
 
Protein coding
A0A7P0TBG3 -GENCODE basicTSL:3
ENST00000401468.7VPS53-2031269422aaENSP00000384294.3
 
Protein coding
E7EVT8 -GENCODE basicTSL:1
ENST00000681295.1VPS53-2551264104aaENSP00000506514.1
 
Protein coding
A0A7P0Z4M8 -GENCODE basic
ENST00000570650.2VPS53-2081050342aaENSP00000458651.2
 
Protein coding
I3L184 -TSL:2CDS 5' incomplete
ENST00000681858.1VPS53-2661012233aaENSP00000505044.1
 
Protein coding
A0A7P0T8A5 -GENCODE basic
ENST00000681103.1VPS53-247926242aaENSP00000505892.1
 
Protein coding
A0A7P0TA53 -GENCODE basic
ENST00000679817.1VPS53-225589109aaENSP00000505032.1
 
Protein coding
A0A7P0T8D0 -GENCODE basic
ENST00000681661.1VPS53-2646682337aaENSP00000506596.1
 
Nonsense mediated decay
A0A7P0Z4Q7 --
ENST00000680872.1VPS53-2405413216aaENSP00000506605.1
 
Nonsense mediated decay
A0A7P0TBJ8 --
ENST00000680641.1VPS53-2364536119aaENSP00000505237.1
 
Nonsense mediated decay
A0A7P0T8K1 --
ENST00000680465.1VPS53-2353235832aaENSP00000505997.1
 
Nonsense mediated decay
CCDS45558Q5VIR6-4 --
ENST00000573028.5VPS53-2153204216aaENSP00000458311.1
 
Nonsense mediated decay
I3L0S6 -TSL:2
ENST00000681478.1VPS53-2593157119aaENSP00000505041.1
 
Nonsense mediated decay
A0A7P0T8K1 --
ENST00000681946.1VPS53-2722973337aaENSP00000505563.1
 
Nonsense mediated decay
A0A7P0Z4Q7 --
ENST00000681943.1VPS53-2712546253aaENSP00000504889.1
 
Nonsense mediated decay
A0A7P0T805 -CDS 5' incomplete
ENST00000576149.5VPS53-220244451aaENSP00000505114.1
 
Nonsense mediated decay
A0A7P0T8A9 -TSL:5
ENST00000572259.2VPS53-2121925109aaENSP00000505287.1
 
Nonsense mediated decay
A0A7P0T8S5 -TSL:3
ENST00000389040.9VPS53-2021903547aaENSP00000373692.5
 
Nonsense mediated decay
F6VX93 -TSL:1
ENST00000681050.1VPS53-2451520237aaENSP00000506640.1
 
Nonsense mediated decay
A0A7P0TBK3 -CDS 5' incomplete
ENST00000681830.1VPS53-265141597aaENSP00000505322.1
 
Nonsense mediated decay
A0A7P0T8V2 -CDS 5' incomplete
ENST00000679959.1VPS53-2271399293aaENSP00000506180.1
 
Nonsense mediated decay
A0A7P0TAF8 -CDS 5' incomplete
ENST00000575207.6VPS53-2181356133aaENSP00000504867.1
 
Nonsense mediated decay
A0A7P0T7U9 -TSL:4
ENST00000681229.1VPS53-2541261136aaENSP00000505837.1
 
Nonsense mediated decay
A0A7P0T9Z7 --
ENST00000681423.1VPS53-2571057117aaENSP00000505115.1
 
Nonsense mediated decay
A0A7P0T8I9 --
ENST00000681866.1VPS53-2673892No protein-
 
Protein coding CDS not defined
---
ENST00000681217.1VPS53-2533785No protein-
 
Protein coding CDS not defined
---
ENST00000679447.1VPS53-2223546No protein-
 
Protein coding CDS not defined
---
ENST00000680958.1VPS53-2421872No protein-
 
Protein coding CDS not defined
---
ENST00000681578.1VPS53-2621870No protein-
 
Protein coding CDS not defined
---
ENST00000680660.1VPS53-2371563No protein-
 
Protein coding CDS not defined
---
ENST00000681570.1VPS53-2611370No protein-
 
Protein coding CDS not defined
---
ENST00000572607.2VPS53-214890No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000679978.1VPS53-229816No protein-
 
Protein coding CDS not defined
---
ENST00000570510.6VPS53-207570No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000679468.1VPS53-223559No protein-
 
Protein coding CDS not defined
---
ENST00000681205.1VPS53-252506No protein-
 
Protein coding CDS not defined
---
ENST00000541903.7VPS53-205490No protein-
 
Protein coding CDS not defined
--TSL:1
ENST00000680944.1VPS53-2416890No protein-
 
Retained intron
---
ENST00000570359.1VPS53-2062781No protein-
 
Retained intron
--TSL:NA
ENST00000681035.1VPS53-2442691No protein-
 
Retained intron
---
ENST00000681897.1VPS53-2682644No protein-
 
Retained intron
---
ENST00000680702.1VPS53-2382403No protein-
 
Retained intron
---
ENST00000680274.1VPS53-2341967No protein-
 
Retained intron
---
ENST00000681600.1VPS53-2631782No protein-
 
Retained intron
---
ENST00000681442.1VPS53-258957No protein-
 
Retained intron
---
ENST00000570771.1VPS53-209366No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 13, Coding exons: 0, Transcript length: 1,872 bps,

Version

ENST00000680958.1

Type

Protein coding CDS not defined

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]