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EnsemblEnsembl Home
Description

coiled-coil domain containing 88A [Source:HGNC Symbol;Acc:HGNC:25523]

Gene Synonyms

APE, FLJ10392, GIV, GRDN, HkRP1, KIAA1212

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000436346.7CCDC88A-20797511871aaENSP00000410608.1
 
Protein coding
-Q3V6T2-1 NM_001365480.1MANE Select v0.95Ensembl CanonicalGENCODE basicAPPRIS ALT1TSL:5
ENST00000263630.13CCDC88A-20196991843aaENSP00000263630.8
 
Protein coding
CCDS33203Q3V6T2-2 -GENCODE basicAPPRIS P3TSL:1
ENST00000336838.10CCDC88A-20295051870aaENSP00000338728.6
 
Protein coding
CCDS46288Q3V6T2-3 -GENCODE basicAPPRIS ALT1TSL:1
ENST00000646796.1CCDC88A-25963781796aaENSP00000493703.1
 
Protein coding
CCDS58710Q3V6T2-5 -GENCODE basic
ENST00000413716.7CCDC88A-20495451797aaENSP00000404431.3
 
Protein coding
-A0A2U3TZV9 -GENCODE basicTSL:1
ENST00000643413.1CCDC88A-22588811842aaENSP00000494811.1
 
Protein coding
-Q3V6T2-4 -GENCODE basicAPPRIS ALT1
ENST00000647401.1CCDC88A-26586471604aaENSP00000496148.1
 
Protein coding
-A0A2R8Y7B1 -GENCODE basic
ENST00000642200.1CCDC88A-21469581871aaENSP00000495919.1
 
Protein coding
-Q3V6T2-1 -GENCODE basicAPPRIS ALT1
ENST00000647396.1CCDC88A-26464931135aaENSP00000496591.1
 
Protein coding
-A0A2R8Y820 -CDS 5' incomplete
ENST00000642563.1CCDC88A-21864011108aaENSP00000493994.1
 
Protein coding
-A0A2R8YCU9 -CDS 5' incomplete
ENST00000644512.1CCDC88A-2376171939aaENSP00000495933.1
 
Protein coding
-A0A2R8Y7D4 -CDS 5' incomplete
ENST00000643375.1CCDC88A-2246142930aaENSP00000494876.1
 
Protein coding
-A0A2R8YDS8 -CDS 5' incomplete
ENST00000645072.1CCDC88A-24456231493aaENSP00000494030.1
 
Protein coding
-A0A2R8Y4W8 -GENCODE basic
ENST00000645477.1CCDC88A-24955931494aaENSP00000495712.1
 
Protein coding
-A0A2R8YG73 -GENCODE basic
ENST00000426576.6CCDC88A-20551201202aaENSP00000405080.1
 
Protein coding
-H7C2C6 -TSL:1CDS 5' incomplete
ENST00000444458.5CCDC88A-2084236374aaENSP00000413401.1
 
Protein coding
-H0Y7K3 -TSL:2CDS 5' incomplete
ENST00000645860.1CCDC88A-25441511113aaENSP00000496581.1
 
Protein coding
-A0A2R8Y885 -CDS 5' incomplete
ENST00000471947.2CCDC88A-2113707102aaENSP00000494991.1
 
Protein coding
-A0A2R8Y5R4 -GENCODE basicTSL:1
ENST00000412148.6CCDC88A-2032974888aaENSP00000390012.1
 
Protein coding
-H0Y470 -TSL:1CDS 5' incomplete
ENST00000644630.1CCDC88A-2382971828aaENSP00000495652.1
 
Protein coding
-A0A2R8YG52 -CDS 3' incomplete
ENST00000647291.1CCDC88A-2612671708aaENSP00000494376.1
 
Protein coding
-A0A2R8Y5D7 -CDS 5' incomplete
ENST00000647517.1CCDC88A-2662316526aaENSP00000495183.1
 
Protein coding
-A0A2R8Y6B2 -CDS 3' incomplete
ENST00000456975.1CCDC88A-2092208736aaENSP00000415267.1
 
Protein coding
-H0Y7U8 -TSL:2CDS 5' and 3' incomplete
ENST00000644033.1CCDC88A-2292138495aaENSP00000496040.1
 
Protein coding
-A0A2R8Y7D9 -CDS 3' incomplete
ENST00000647341.1CCDC88A-2621437317aaENSP00000493656.1
 
Protein coding
-A0A2R8YD81 -CDS 3' incomplete
ENST00000647547.1CCDC88A-2671043166aaENSP00000493675.1
 
Protein coding
-A0A2R8Y4C6 -CDS 5' incomplete
ENST00000643440.1CCDC88A-226887296aaENSP00000494401.1
 
Protein coding
-A0A2R8Y4Z5 -CDS 5' and 3' incomplete
ENST00000476903.1CCDC88A-21341955aaENSP00000494021.1
 
Protein coding
-A0A2R8YCW0 -TSL:3CDS 5' incomplete
ENST00000643265.1CCDC88A-2237687974aaENSP00000496310.1
 
Nonsense mediated decay
-A0A2R8YGU1 -CDS 5' incomplete
ENST00000645311.1CCDC88A-24671141406aaENSP00000494054.1
 
Nonsense mediated decay
-A0A2R8Y4X4 --
ENST00000646285.1CCDC88A-256701715aaENSP00000493638.1
 
Nonsense mediated decay
-A0A2R8YCJ0 -CDS 5' incomplete
ENST00000644415.1CCDC88A-2353216299aaENSP00000496555.1
 
Nonsense mediated decay
-A0A2R8Y802 -CDS 5' incomplete
ENST00000647098.1CCDC88A-2602179268aaENSP00000496475.1
 
Nonsense mediated decay
-A0A2R8Y846 --
ENST00000645031.1CCDC88A-2431956268aaENSP00000493668.1
 
Nonsense mediated decay
-A0A2R8Y846 --
ENST00000642890.1CCDC88A-2201875213aaENSP00000494371.1
 
Nonsense mediated decay
-A0A2R8YD99 --
ENST00000645529.1CCDC88A-2521856130aaENSP00000496758.1
 
Nonsense mediated decay
-A0A2R8YFV1 --
ENST00000644193.1CCDC88A-2321732133aaENSP00000495208.1
 
Nonsense mediated decay
-A0A2R8YFK8 --
ENST00000645168.1CCDC88A-245111894aaENSP00000496195.1
 
Nonsense mediated decay
-A0A2R8Y7L3 -CDS 5' incomplete
ENST00000644825.1CCDC88A-24199042aaENSP00000494555.1
 
Nonsense mediated decay
-A0A2R8Y562 -CDS 5' incomplete
ENST00000645484.1CCDC88A-2502097No protein-
 
Processed transcript
----
ENST00000468534.2CCDC88A-2102074No protein-
 
Processed transcript
---TSL:3
ENST00000646324.1CCDC88A-2571931No protein-
 
Processed transcript
----
ENST00000642328.1CCDC88A-216792No protein-
 
Processed transcript
----
ENST00000430086.1CCDC88A-206582No protein-
 
Processed transcript
---TSL:3
ENST00000645571.1CCDC88A-2535499No protein-
 
Retained intron
----
ENST00000645969.1CCDC88A-2554425No protein-
 
Retained intron
----
ENST00000644809.1CCDC88A-2404286No protein-
 
Retained intron
----
ENST00000645485.1CCDC88A-2513864No protein-
 
Retained intron
----
ENST00000644890.1CCDC88A-2423596No protein-
 
Retained intron
----
ENST00000645342.1CCDC88A-2473546No protein-
 
Retained intron
----
ENST00000643873.1CCDC88A-2283360No protein-
 
Retained intron
----
ENST00000644456.1CCDC88A-2363162No protein-
 
Retained intron
----
ENST00000644390.1CCDC88A-2342712No protein-
 
Retained intron
----
ENST00000643634.1CCDC88A-2272636No protein-
 
Retained intron
----
ENST00000645450.1CCDC88A-2482039No protein-
 
Retained intron
----
ENST00000642514.1CCDC88A-2172029No protein-
 
Retained intron
----
ENST00000643103.1CCDC88A-2212008No protein-
 
Retained intron
----
ENST00000643205.1CCDC88A-2221784No protein-
 
Retained intron
----
ENST00000642266.1CCDC88A-2151777No protein-
 
Retained intron
----
ENST00000644127.1CCDC88A-2301586No protein-
 
Retained intron
----
ENST00000647383.1CCDC88A-2631424No protein-
 
Retained intron
----
ENST00000644157.1CCDC88A-2311270No protein-
 
Retained intron
----
ENST00000642784.1CCDC88A-2191270No protein-
 
Retained intron
----
ENST00000644662.1CCDC88A-2391152No protein-
 
Retained intron
----
ENST00000646474.1CCDC88A-2581151No protein-
 
Retained intron
----
ENST00000474059.2CCDC88A-212581No protein-
 
Retained intron
---TSL:5
ENST00000644332.1CCDC88A-233476No protein-
 
Retained intron
----
Description

long intergenic non-protein coding RNA 963 [Source:HGNC Symbol;Acc:HGNC:48716]

Gene Synonyms

MetaLnc9

Transcript IDNamebpProteinTranslation IDBiotypeCCDSRefSeq MatchFlags
ENST00000622680.2LINC00963-2141148No protein-
 
Retained intron
--TSL:1
ENST00000608669.1LINC00963-212531No protein-
 
Retained intron
--TSL:5
ENST00000653047.1LINC00963-2221257No protein-
 
lncRNA
--Ensembl Canonical
ENST00000419300.3LINC00963-2029557No protein-
 
lncRNA
--GENCODE basicTSL:1
ENST00000662331.1LINC00963-2452307No protein-
 
lncRNA
---
ENST00000444184.6LINC00963-2052069No protein-
 
lncRNA
--TSL:1
ENST00000664811.1LINC00963-2492047No protein-
 
lncRNA
---
ENST00000661101.1LINC00963-2432017No protein-
 
lncRNA
---
ENST00000663000.1LINC00963-2461997No protein-
 
lncRNA
---
ENST00000654822.1LINC00963-2291910No protein-
 
lncRNA
--GENCODE basic
ENST00000657306.1LINC00963-2341843No protein-
 
lncRNA
---
ENST00000658785.1LINC00963-2371798No protein-
 
lncRNA
---
ENST00000659188.1LINC00963-2391780No protein-
 
lncRNA
---
ENST00000669210.1LINC00963-2611720No protein-
 
lncRNA
--GENCODE basic
ENST00000666559.1LINC00963-2541712No protein-
 
lncRNA
---
ENST00000656234.1LINC00963-2321701No protein-
 
lncRNA
---
ENST00000659690.1LINC00963-2411667No protein-
 
lncRNA
---
ENST00000423918.5LINC00963-2031654No protein-
 
lncRNA
--TSL:2
ENST00000671609.1LINC00963-2651632No protein-
 
lncRNA
---
ENST00000669939.1LINC00963-2621611No protein-
 
lncRNA
---
ENST00000671555.1LINC00963-2631590No protein-
 
lncRNA
--GENCODE basic
ENST00000608272.2LINC00963-2101480No protein-
 
lncRNA
--TSL:5
ENST00000622120.2LINC00963-2131464No protein-
 
lncRNA
--TSL:5
ENST00000669088.1LINC00963-2601459No protein-
 
lncRNA
---
ENST00000660643.1LINC00963-2421433No protein-
 
lncRNA
--GENCODE basic
ENST00000656664.1LINC00963-2331424No protein-
 
lncRNA
---
ENST00000665880.1LINC00963-2501420No protein-
 
lncRNA
---
ENST00000653700.1LINC00963-2251404No protein-
 
lncRNA
---
ENST00000454968.5LINC00963-2081403No protein-
 
lncRNA
--TSL:1
ENST00000654204.1LINC00963-2271403No protein-
 
lncRNA
---
ENST00000655787.1LINC00963-2301394No protein-
 
lncRNA
---
ENST00000624138.4LINC00963-2181389No protein-
 
lncRNA
--TSL:5
ENST00000666041.1LINC00963-2521364No protein-
 
lncRNA
---
ENST00000653436.1LINC00963-2241343No protein-
 
lncRNA
---
ENST00000668074.1LINC00963-2571332No protein-
 
lncRNA
---
ENST00000665998.1LINC00963-2511297No protein-
 
lncRNA
---
ENST00000657389.1LINC00963-2351280No protein-
 
lncRNA
---
ENST00000663727.1LINC00963-2481236No protein-
 
lncRNA
---
ENST00000667047.1LINC00963-2551234No protein-
 
lncRNA
--GENCODE basic
ENST00000667499.1LINC00963-2561227No protein-
 
lncRNA
---
ENST00000668206.1LINC00963-2581213No protein-
 
lncRNA
---
ENST00000658175.1LINC00963-2361198No protein-
 
lncRNA
---
ENST00000662047.1LINC00963-2441156No protein-
 
lncRNA
---
ENST00000658999.1LINC00963-2381120No protein-
 
lncRNA
---
ENST00000654286.1LINC00963-2281119No protein-
 
lncRNA
---
ENST00000453213.2LINC00963-2061111No protein-
 
lncRNA
--TSL:3
ENST00000625171.4LINC00963-2201099No protein-
 
lncRNA
--TSL:5
ENST00000666282.1LINC00963-2531068No protein-
 
lncRNA
---
ENST00000655962.1LINC00963-2311050No protein-
 
lncRNA
--GENCODE basic
ENST00000412141.2LINC00963-201973No protein-
 
lncRNA
--TSL:1
ENST00000652803.1LINC00963-221970No protein-
 
lncRNA
---
ENST00000653386.1LINC00963-223962No protein-
 
lncRNA
---
ENST00000654131.1LINC00963-226960No protein-
 
lncRNA
---
ENST00000454635.6LINC00963-207910No protein-
 
lncRNA
--GENCODE basicTSL:5
ENST00000659535.1LINC00963-240901No protein-
 
lncRNA
---
ENST00000623185.4LINC00963-216849No protein-
 
lncRNA
--TSL:5
ENST00000668919.1LINC00963-259808No protein-
 
lncRNA
---
ENST00000663083.1LINC00963-247781No protein-
 
lncRNA
---
ENST00000608369.2LINC00963-211709No protein-
 
lncRNA
--TSL:5
ENST00000624009.3LINC00963-217663No protein-
 
lncRNA
--GENCODE basicTSL:5
ENST00000671598.1LINC00963-264558No protein-
 
lncRNA
---
ENST00000607931.1LINC00963-209473No protein-
 
lncRNA
--TSL:5
ENST00000624390.1LINC00963-219472No protein-
 
lncRNA
--TSL:5
ENST00000622972.3LINC00963-215444No protein-
 
lncRNA
--TSL:5
ENST00000427778.1LINC00963-204382No protein-
 
lncRNA
--TSL:2
Description

pre-mRNA processing factor 40A [Source:MGI Symbol;Acc:MGI:1860512]

Gene Synonyms

2810012K09Rik, FBP11, Fnbp3

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000239398.2Prpf40a-2113565953aaENSMUSP00000159339.2
 
Protein coding
CCDS16038Q9R1C7-1 GENCODE basic
ENSMUST00000076313.14Prpf40a-2017374966aaENSMUSP00000075655.8
 
Protein coding
-A0A6Q6PUT5 TSL:1CDS 5' incomplete
ENSMUST00000210789.3Prpf40a-2083773926aaENSMUSP00000147599.3
 
Protein coding
-A0A1B0GRU8 GENCODE basicAPPRIS P1TSL:5
ENSMUST00000209364.3Prpf40a-2063251926aaENSMUSP00000147671.2
 
Protein coding
-A0A1B0GRU8 GENCODE basicAPPRIS P1TSL:5
ENSMUST00000211712.3Prpf40a-2102227102aaENSMUSP00000147939.3
 
Nonsense mediated decay
-A0A1B0GSH6 TSL:5
ENSMUST00000125243.3Prpf40a-2021425100aaENSMUSP00000117406.3
 
Nonsense mediated decay
-A2AQW6 TSL:5CDS 5' incomplete
ENSMUST00000209508.3Prpf40a-2071290144aaENSMUSP00000147910.3
 
Nonsense mediated decay
-A0A1B0GSF1 TSL:5
ENSMUST00000211102.2Prpf40a-209107484aaENSMUSP00000148161.2
 
Nonsense mediated decay
-A0A1B0GT17 TSL:5CDS 5' incomplete
ENSMUST00000152922.8Prpf40a-2053065No protein-
 
Processed transcript
--TSL:1
ENSMUST00000132031.2Prpf40a-203665No protein-
 
Processed transcript
--TSL:3
ENSMUST00000133384.2Prpf40a-204597No protein-
 
Processed transcript
--TSL:3
Description

BRCA2 DNA repair associated [Source:HGNC Symbol;Acc:HGNC:1101]

Gene Synonyms

BRCC2, FACD, FAD, FAD1, FANCD, FANCD1, XRCC11

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000380152.8BRCA2-201119543418aaENSP00000369497.3
 
Protein coding
CCDS9344P51587 NM_000059.4MANE Select v0.95Ensembl CanonicalGENCODE basicAPPRIS P1TSL:5
ENST00000680887.1BRCA2-210118803418aaENSP00000505508.1
 
Protein coding
CCDS9344--APPRIS P1
ENST00000544455.6BRCA2-206118543418aaENSP00000439902.1
 
Protein coding
CCDS9344P51587 -GENCODE basicAPPRIS P1TSL:1
ENST00000530893.6BRCA2-2042011481aaENSP00000499438.1
 
Protein coding
-A0A590UJI7 -TSL:1CDS 3' incomplete
ENST00000614259.2BRCA2-207117632649aaENSP00000506251.1
 
Nonsense mediated decay
---TSL:2
ENST00000665585.1BRCA2-2082598438aaENSP00000499570.1
 
Nonsense mediated decay
-A0A590UJU6 -CDS 5' incomplete
ENST00000470094.1BRCA2-202842186aaENSP00000434898.1
 
Nonsense mediated decay
-H0YE37 -TSL:5CDS 5' incomplete
ENST00000666593.1BRCA2-20952358aaENSP00000499256.1
 
Nonsense mediated decay
-A0A590UJ24 -CDS 5' incomplete
ENST00000528762.1BRCA2-20349564aaENSP00000433168.1
 
Nonsense mediated decay
-H0YD86 -TSL:4CDS 5' incomplete
ENST00000533776.1BRCA2-205523No protein-
 
Retained intron
---TSL:3
Statistics

Exons: 26, Coding exons: 16, Transcript length: 11,763 bps, Translation length: 2,649 residues

Transcript Support Level (TSL)

TSL:2

Version

ENST00000614259.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript-based displays

    HASH(0x31c8d488)