Human (GRCh38.p14)
Description

collagen type II alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2200]

Gene Synonyms

AOM, SEDC, STL1

Location
About this transcript

This transcript has 54 exons, is annotated with 77 domains and features, is associated with 16587 variant alleles and maps to 1440 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000380518.8COL2A1-20250591487aaENSP00000369889.3
 
Protein coding
CCDS41778P02458-2 NM_001844.5MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000337299.7COL2A1-20144421418aaENSP00000338213.6
 
Protein coding
CCDS8759P02458-1 -GENCODE basicTSL:1
ENST00000493991.5COL2A1-2083756No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000474996.6COL2A1-205760No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000465743.2COL2A1-203546No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000490609.2COL2A1-207747No protein-
 
Retained intron
--TSL:2
ENST00000546974.1COL2A1-209703No protein-
 
Retained intron
--TSL:1
ENST00000483376.1COL2A1-206641No protein-
 
Retained intron
--TSL:5
ENST00000466884.1COL2A1-204478No protein-
 
Retained intron
--TSL:5
Statistics

Exons: 54, Coding exons: 54, Transcript length: 5,059 bps, Translation length: 1,487 residues

MANE

This MANE Select transcript contains ENSP00000369889 and matches to NM_001844.5 and NP_001835.3

Uniprot

This transcript corresponds to the following Uniprot identifiers: P02458

CCDS

This transcript is a member of the Human CCDS set: CCDS41778

Transcript Support Level (TSL)

TSL:1

Version

ENST00000380518.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.