Human (GRCh38.p14)
Description

leucine rich repeat containing 49 [Source:HGNC Symbol;Acc:HGNC:25965]

Gene Synonyms

CSTPP2, FLJ20156, PGS4

Location
About this transcript

This transcript has 17 exons, is annotated with 32 domains and features, is associated with 76860 variant alleles and maps to 579 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000260382.10LRRC49-2016176686aaENSP00000260382.4
 
Protein coding
CCDS32282Q8IUZ0-1 NM_017691.5MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P4TSL:1
ENST00000544974.6LRRC49-2046605676aaENSP00000439600.2
 
Protein coding
CCDS61694Q8IUZ0-4 -GENCODE basicTSL:2
ENST00000443425.6LRRC49-2033085642aaENSP00000414065.2
 
Protein coding
CCDS55971Q8IUZ0-3 -GENCODE basicTSL:2
ENST00000560369.5LRRC49-2232586691aaENSP00000453273.1
 
Protein coding
CCDS58376Q8IUZ0-2 -GENCODE basicAPPRIS ALT1TSL:2
ENST00000560691.5LRRC49-2242531392aaENSP00000454170.1
 
Protein coding
CCDS86472H0YNV5 -GENCODE basicTSL:2
ENST00000560158.6LRRC49-2221898374aaENSP00000452775.1
 
Protein coding
H0YKE9 -GENCODE basicTSL:5
ENST00000559806.5LRRC49-220744115aaENSP00000453300.1
 
Protein coding
H0YLQ8 -TSL:2CDS 3' incomplete
ENST00000558546.5LRRC49-21160230aaENSP00000452925.1
 
Protein coding
H0YKS7 -TSL:4CDS 3' incomplete
ENST00000558808.5LRRC49-21358596aaENSP00000452821.1
 
Protein coding
H0YKI5 -TSL:3CDS 3' incomplete
ENST00000557977.5LRRC49-20558421aaENSP00000454760.1
 
Protein coding
H3BNA9 -TSL:4CDS 3' incomplete
ENST00000558456.5LRRC49-21058078aaENSP00000454026.1
 
Protein coding
H0YNI5 -TSL:3CDS 3' incomplete
ENST00000559069.1LRRC49-21457091aaENSP00000453402.1
 
Protein coding
H0YLZ6 -TSL:4CDS 3' incomplete
ENST00000560755.5LRRC49-225398117aaENSP00000452894.1
 
Protein coding
H0YKQ0 -TSL:4CDS 3' incomplete
ENST00000561081.5LRRC49-227306174aaENSP00000453728.1
 
Nonsense mediated decay
A0A0B4J283 -TSL:2
ENST00000560107.6LRRC49-221272167aaENSP00000453807.1
 
Nonsense mediated decay
H0YMZ6 -TSL:5
ENST00000559201.5LRRC49-21593862aaENSP00000454196.1
 
Nonsense mediated decay
H0YM43 -TSL:3
ENST00000558204.5LRRC49-20855962aaENSP00000453038.1
 
Nonsense mediated decay
H0YM43 -TSL:4
ENST00000558032.5LRRC49-20654662aaENSP00000453456.1
 
Nonsense mediated decay
H0YM43 -TSL:4
ENST00000559670.5LRRC49-21852767aaENSP00000453731.1
 
Nonsense mediated decay
H0YMT2 -TSL:4
ENST00000436542.6LRRC49-2022294No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000561131.2LRRC49-228738No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000559422.1LRRC49-216727No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000558137.5LRRC49-207636No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000561285.5LRRC49-229566No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000558799.5LRRC49-212557No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000560980.5LRRC49-2261443No protein-
 
Retained intron
--TSL:5
ENST00000559469.5LRRC49-2171204No protein-
 
Retained intron
--TSL:5
ENST00000559685.5LRRC49-219758No protein-
 
Retained intron
--TSL:5
ENST00000558271.5LRRC49-209573No protein-
 
Retained intron
--TSL:4
Statistics

Exons: 17, Coding exons: 16, Transcript length: 6,605 bps, Translation length: 676 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8IUZ0

CCDS

This transcript is a member of the Human CCDS set: CCDS61694

Transcript Support Level (TSL)

TSL:2

Version

ENST00000544974.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

RNA-Seq supported partial [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.