Human (GRCh38.p14)
Description

leucine rich repeat containing 49 [Source:HGNC Symbol;Acc:HGNC:25965]

Gene Synonyms

CSTPP2, FLJ20156, PGS4

Location
About this transcript

This transcript has 10 exons, is associated with 34189 variant alleles and maps to 238 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000260382.10LRRC49-2016176686aaENSP00000260382.4
 
Protein coding
CCDS32282Q8IUZ0-1 NM_017691.5MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P4TSL:1
ENST00000544974.6LRRC49-2046605676aaENSP00000439600.2
 
Protein coding
CCDS61694Q8IUZ0-4 -GENCODE basicTSL:2
ENST00000443425.6LRRC49-2033085642aaENSP00000414065.2
 
Protein coding
CCDS55971Q8IUZ0-3 -GENCODE basicTSL:2
ENST00000560369.5LRRC49-2232586691aaENSP00000453273.1
 
Protein coding
CCDS58376Q8IUZ0-2 -GENCODE basicAPPRIS ALT1TSL:2
ENST00000560691.5LRRC49-2242531392aaENSP00000454170.1
 
Protein coding
CCDS86472H0YNV5 -GENCODE basicTSL:2
ENST00000560158.6LRRC49-2221898374aaENSP00000452775.1
 
Protein coding
H0YKE9 -GENCODE basicTSL:5
ENST00000559806.5LRRC49-220744115aaENSP00000453300.1
 
Protein coding
H0YLQ8 -TSL:2CDS 3' incomplete
ENST00000558546.5LRRC49-21160230aaENSP00000452925.1
 
Protein coding
H0YKS7 -TSL:4CDS 3' incomplete
ENST00000558808.5LRRC49-21358596aaENSP00000452821.1
 
Protein coding
H0YKI5 -TSL:3CDS 3' incomplete
ENST00000557977.5LRRC49-20558421aaENSP00000454760.1
 
Protein coding
H3BNA9 -TSL:4CDS 3' incomplete
ENST00000558456.5LRRC49-21058078aaENSP00000454026.1
 
Protein coding
H0YNI5 -TSL:3CDS 3' incomplete
ENST00000559069.1LRRC49-21457091aaENSP00000453402.1
 
Protein coding
H0YLZ6 -TSL:4CDS 3' incomplete
ENST00000560755.5LRRC49-225398117aaENSP00000452894.1
 
Protein coding
H0YKQ0 -TSL:4CDS 3' incomplete
ENST00000561081.5LRRC49-227306174aaENSP00000453728.1
 
Nonsense mediated decay
A0A0B4J283 -TSL:2
ENST00000560107.6LRRC49-221272167aaENSP00000453807.1
 
Nonsense mediated decay
H0YMZ6 -TSL:5
ENST00000559201.5LRRC49-21593862aaENSP00000454196.1
 
Nonsense mediated decay
H0YM43 -TSL:3
ENST00000558204.5LRRC49-20855962aaENSP00000453038.1
 
Nonsense mediated decay
H0YM43 -TSL:4
ENST00000558032.5LRRC49-20654662aaENSP00000453456.1
 
Nonsense mediated decay
H0YM43 -TSL:4
ENST00000559670.5LRRC49-21852767aaENSP00000453731.1
 
Nonsense mediated decay
H0YMT2 -TSL:4
ENST00000436542.6LRRC49-2022294No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000561131.2LRRC49-228738No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000559422.1LRRC49-216727No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000558137.5LRRC49-207636No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000561285.5LRRC49-229566No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000558799.5LRRC49-212557No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000560980.5LRRC49-2261443No protein-
 
Retained intron
--TSL:5
ENST00000559469.5LRRC49-2171204No protein-
 
Retained intron
--TSL:5
ENST00000559685.5LRRC49-219758No protein-
 
Retained intron
--TSL:5
ENST00000558271.5LRRC49-209573No protein-
 
Retained intron
--TSL:4
Statistics

Exons: 10, Coding exons: 0, Transcript length: 1,443 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENST00000560980.5

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.