Human (GRCh38.p14)
Description

leucine rich repeat containing 49 [Source:HGNC Symbol;Acc:HGNC:25965]

Gene Synonyms

CSTPP2, FLJ20156, PGS4

Location
About this transcript

This transcript has 5 exons, is annotated with 6 domains and features, is associated with 27927 variant alleles and maps to 154 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000260382.10LRRC49-2016176686aaENSP00000260382.4
 
Protein coding
CCDS32282Q8IUZ0-1 NM_017691.5MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P4TSL:1
ENST00000544974.6LRRC49-2046605676aaENSP00000439600.2
 
Protein coding
CCDS61694Q8IUZ0-4 -GENCODE basicTSL:2
ENST00000443425.6LRRC49-2033085642aaENSP00000414065.2
 
Protein coding
CCDS55971Q8IUZ0-3 -GENCODE basicTSL:2
ENST00000560369.5LRRC49-2232586691aaENSP00000453273.1
 
Protein coding
CCDS58376Q8IUZ0-2 -GENCODE basicAPPRIS ALT1TSL:2
ENST00000560691.5LRRC49-2242531392aaENSP00000454170.1
 
Protein coding
CCDS86472H0YNV5 -GENCODE basicTSL:2
ENST00000560158.6LRRC49-2221898374aaENSP00000452775.1
 
Protein coding
H0YKE9 -GENCODE basicTSL:5
ENST00000559806.5LRRC49-220744115aaENSP00000453300.1
 
Protein coding
H0YLQ8 -TSL:2CDS 3' incomplete
ENST00000558546.5LRRC49-21160230aaENSP00000452925.1
 
Protein coding
H0YKS7 -TSL:4CDS 3' incomplete
ENST00000558808.5LRRC49-21358596aaENSP00000452821.1
 
Protein coding
H0YKI5 -TSL:3CDS 3' incomplete
ENST00000557977.5LRRC49-20558421aaENSP00000454760.1
 
Protein coding
H3BNA9 -TSL:4CDS 3' incomplete
ENST00000558456.5LRRC49-21058078aaENSP00000454026.1
 
Protein coding
H0YNI5 -TSL:3CDS 3' incomplete
ENST00000559069.1LRRC49-21457091aaENSP00000453402.1
 
Protein coding
H0YLZ6 -TSL:4CDS 3' incomplete
ENST00000560755.5LRRC49-225398117aaENSP00000452894.1
 
Protein coding
H0YKQ0 -TSL:4CDS 3' incomplete
ENST00000561081.5LRRC49-227306174aaENSP00000453728.1
 
Nonsense mediated decay
A0A0B4J283 -TSL:2
ENST00000560107.6LRRC49-221272167aaENSP00000453807.1
 
Nonsense mediated decay
H0YMZ6 -TSL:5
ENST00000559201.5LRRC49-21593862aaENSP00000454196.1
 
Nonsense mediated decay
H0YM43 -TSL:3
ENST00000558204.5LRRC49-20855962aaENSP00000453038.1
 
Nonsense mediated decay
H0YM43 -TSL:4
ENST00000558032.5LRRC49-20654662aaENSP00000453456.1
 
Nonsense mediated decay
H0YM43 -TSL:4
ENST00000559670.5LRRC49-21852767aaENSP00000453731.1
 
Nonsense mediated decay
H0YMT2 -TSL:4
ENST00000436542.6LRRC49-2022294No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000561131.2LRRC49-228738No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000559422.1LRRC49-216727No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000558137.5LRRC49-207636No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000561285.5LRRC49-229566No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000558799.5LRRC49-212557No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000560980.5LRRC49-2261443No protein-
 
Retained intron
--TSL:5
ENST00000559469.5LRRC49-2171204No protein-
 
Retained intron
--TSL:5
ENST00000559685.5LRRC49-219758No protein-
 
Retained intron
--TSL:5
ENST00000558271.5LRRC49-209573No protein-
 
Retained intron
--TSL:4
Statistics

Exons: 5, Coding exons: 4, Transcript length: 744 bps, Translation length: 115 residues

Transcript Support Level (TSL)

TSL:2

Incomplete CDS

CDS 3' incomplete

Version

ENST00000559806.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.