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EnsemblEnsembl Home
Description

prostate cancer associated 3 [Source:HGNC Symbol;Acc:HGNC:8637]

Gene Synonyms

DD3, NCRNA00019, PCAT3, PRUNE2-AS1

Location
Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSRefSeq MatchFlags
PCA3-207ENST00000644657.12374No protein-
 
lncRNA
--Ensembl CanonicalGENCODE basic
PCA3-201ENST00000412654.13922No protein-
 
lncRNA
--GENCODE basicTSL:1
PCA3-210ENST00000645809.13735No protein-
 
lncRNA
--GENCODE basic
PCA3-214ENST00000646947.13670No protein-
 
lncRNA
--GENCODE basic
PCA3-206ENST00000644302.12825No protein-
 
lncRNA
---
PCA3-209ENST00000645704.12767No protein-
 
lncRNA
--GENCODE basic
PCA3-216ENST00000647325.12744No protein-
 
lncRNA
---
PCA3-208ENST00000645196.12729No protein-
 
lncRNA
--GENCODE basic
PCA3-213ENST00000646854.12498No protein-
 
lncRNA
---
PCA3-203ENST00000642542.11820No protein-
 
lncRNA
---
PCA3-205ENST00000643823.11429No protein-
 
lncRNA
--GENCODE basic
PCA3-202ENST00000642205.11099No protein-
 
lncRNA
---
PCA3-218ENST00000665558.11091No protein-
 
lncRNA
---
PCA3-212ENST00000645887.1898No protein-
 
lncRNA
---
PCA3-211ENST00000645839.1838No protein-
 
lncRNA
---
PCA3-204ENST00000642794.1644No protein-
 
lncRNA
---
PCA3-215ENST00000647300.1634No protein-
 
lncRNA
---
PCA3-217ENST00000647409.1322No protein-
 
lncRNA
---
Description

suppression of tumorigenicity 7 [Source:HGNC Symbol;Acc:HGNC:11351]

Gene Synonyms

ETS7q, FAM4A, FAM4A1, HELG, RAY1, SEN4, TSG7

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ST7-202ENST00000323984.82093577aaENSP00000325673.3
 
Protein coding
-H7BXS2 NM_001369598.1MANE Select v0.93Ensembl CanonicalGENCODE basicTSL:5
ST7-201ENST00000265437.92899585aaENSP00000265437.5
 
Protein coding
CCDS5770Q9NRC1-1 -GENCODE basicTSL:1
ST7-208ENST00000393451.72110554aaENSP00000377097.3
 
Protein coding
CCDS5769Q9NRC1-2 -GENCODE basicAPPRIS P1TSL:1
ST7-203ENST00000393443.52360499aaENSP00000377089.1
 
Protein coding
-Q9NRC1-6 -GENCODE basicTSL:2
ST7-206ENST00000393447.82182534aaENSP00000377093.4
 
Protein coding
-B7Z4L1 -GENCODE basicTSL:1
ST7-220ENST00000465133.52155251aaENSP00000420052.1
 
Protein coding
-C9JRW1 -GENCODE basicTSL:5
ST7-207ENST00000393449.52127572aaENSP00000377095.1
 
Protein coding
-E7EPD9 -GENCODE basicTSL:5
ST7-205ENST00000393446.62114523aaENSP00000377092.2
 
Protein coding
-E9PCV1 -GENCODE basicTSL:5
ST7-204ENST00000393444.72113511aaENSP00000377090.3
 
Protein coding
-G3XAH9 -GENCODE basicTSL:1
ST7-212ENST00000432298.51956531aaENSP00000411118.1
 
Protein coding
-B7Z4U3 -GENCODE basicTSL:2
ST7-211ENST00000422922.51887508aaENSP00000414031.1
 
Protein coding
-E7EPW5 -GENCODE basicTSL:5
ST7-216ENST00000446490.51694558aaENSP00000402934.1
 
Protein coding
-E7ENZ9 -TSL:5CDS 3' incomplete
ST7-227ENST00000490039.11689561aaENSP00000419516.1
 
Protein coding
-C9JU30 -TSL:5CDS 3' incomplete
ST7-223ENST00000477742.578097aaENSP00000419715.1
 
Protein coding
-C9JZV9 -TSL:4CDS 3' incomplete
ST7-213ENST00000434836.557924aaENSP00000393040.1
 
Protein coding
-C9JX79 -TSL:4CDS 3' incomplete
ST7-209ENST00000417919.557762aaENSP00000391444.1
 
Protein coding
-C9J2Z1 -TSL:4CDS 3' incomplete
ST7-210ENST00000420755.5549138aaENSP00000388698.1
 
Protein coding
-C9JRQ0 -TSL:5CDS 3' incomplete
ST7-217ENST00000449366.554287aaENSP00000413601.1
 
Protein coding
-C9JWK8 -TSL:5CDS 3' incomplete
ST7-214ENST00000438863.5100552aaENSP00000390830.1
 
Nonsense mediated decay
-E9PF01 -TSL:5
ST7-215ENST00000443979.580564aaENSP00000392876.1
 
Nonsense mediated decay
-E7EMS3 -TSL:5
ST7-225ENST00000487459.51681No protein-
 
Processed transcript
---TSL:5
ST7-228ENST00000543837.51031No protein-
 
Processed transcript
---TSL:5
ST7-226ENST00000489293.5904No protein-
 
Processed transcript
---TSL:1
ST7-221ENST00000465641.5764No protein-
 
Processed transcript
---TSL:5
ST7-222ENST00000467538.5565No protein-
 
Processed transcript
---TSL:5
ST7-218ENST00000462544.1550No protein-
 
Processed transcript
---TSL:4
ST7-224ENST00000485394.6485No protein-
 
Processed transcript
---TSL:5
ST7-219ENST00000464020.1565No protein-
 
Retained intron
---TSL:3
Description

intersectin 1 (SH3 domain protein 1A) [Source:MGI Symbol;Acc:MGI:1338069]

Gene Synonyms

EHSH1, Eh domain, SH3 domain regulator of endocytosis 1, Ese1, Intersectin-L, Sh3p17

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
Itsn1-208ENSMUST00000114002.9140121714aaENSMUSP00000109635.3
 
Protein coding
CCDS37402Q9Z0R4-1 GENCODE basicAPPRIS P2TSL:5
Itsn1-203ENSMUST00000095909.106103621aaENSMUSP00000093598.4
 
Protein coding
CCDS49914Q6NZJ5 GENCODE basicTSL:1
Itsn1-201ENSMUST00000056482.1453641213aaENSMUSP00000056011.8
 
Protein coding
CCDS49913Q9Z0R4-2 GENCODE basicTSL:1
Itsn1-202ENSMUST00000064797.1274181719aaENSMUSP00000066361.6
 
Protein coding
-E9Q0N0 GENCODE basicAPPRIS ALT2TSL:5
Itsn1-206ENSMUST00000113999.853931218aaENSMUSP00000109632.2
 
Protein coding
-E9Q3I5 GENCODE basicTSL:5
Itsn1-205ENSMUST00000113996.851471142aaENSMUSP00000109629.2
 
Protein coding
-E9Q3I8 GENCODE basicTSL:5
Itsn1-207ENSMUST00000114001.838981176aaENSMUSP00000109634.2
 
Protein coding
-E9Q3I4 GENCODE basicTSL:5
Itsn1-204ENSMUST00000113993.837871147aaENSMUSP00000109626.2
 
Protein coding
-E9Q3I9 GENCODE basicTSL:5
Itsn1-229ENSMUST00000231852.21562279aaENSMUSP00000156129.2
 
Protein coding
-A0A338P7I4 GENCODE basic
Itsn1-228ENSMUST00000231735.21437279aaENSMUSP00000156289.2
 
Protein coding
-A0A338P7I4 GENCODE basic
Itsn1-215ENSMUST00000135057.21110359aaENSMUSP00000117018.2
 
Protein coding
-D3Z6P4 TSL:5CDS 3' incomplete
Itsn1-210ENSMUST00000125052.81036346aaENSMUSP00000115985.2
 
Protein coding
-F6U8U1 TSL:5CDS 5' and 3' incomplete
Itsn1-221ENSMUST00000143023.2821256aaENSMUSP00000119654.2
 
Protein coding
-F6R6C8 TSL:1CDS 5' incomplete
Itsn1-227ENSMUST00000231535.2767131aaENSMUSP00000156037.2
 
Protein coding
-A0A338P6L8 CDS 3' incomplete
Itsn1-230ENSMUST00000231974.2728187aaENSMUSP00000155993.2
 
Protein coding
-A0A338P6K7 CDS 3' incomplete
Itsn1-220ENSMUST00000141625.2519173aaENSMUSP00000115563.2
 
Protein coding
-F6TCC6 TSL:5CDS 5' and 3' incomplete
Itsn1-216ENSMUST00000137575.2105516aaENSMUSP00000156103.2
 
Nonsense mediated decay
-Q6J1F0 TSL:1CDS 5' incomplete
Itsn1-224ENSMUST00000153741.299177aaENSMUSP00000117320.2
 
Nonsense mediated decay
-Q6J1S9 TSL:1CDS 5' incomplete
Itsn1-211ENSMUST00000126374.379373aaENSMUSP00000114718.2
 
Nonsense mediated decay
-F6ZLP6 TSL:1CDS 5' incomplete
Itsn1-212ENSMUST00000131739.242266aaENSMUSP00000114145.2
 
Nonsense mediated decay
-F6ZX53 TSL:1CDS 5' incomplete
Itsn1-231ENSMUST00000232198.21167No protein-
 
Processed transcript
---
Itsn1-223ENSMUST00000151044.2723No protein-
 
Processed transcript
--TSL:3
Itsn1-219ENSMUST00000141073.2568No protein-
 
Processed transcript
--TSL:3
Itsn1-214ENSMUST00000133389.2481No protein-
 
Processed transcript
--TSL:1
Itsn1-209ENSMUST00000124094.8442No protein-
 
Processed transcript
--TSL:2
Itsn1-217ENSMUST00000138117.22818No protein-
 
Retained intron
--TSL:1
Itsn1-225ENSMUST00000154967.2777No protein-
 
Retained intron
--TSL:3
Itsn1-222ENSMUST00000144101.2492No protein-
 
Retained intron
--TSL:1
Itsn1-213ENSMUST00000131983.8488No protein-
 
Retained intron
--TSL:2
Itsn1-226ENSMUST00000156841.2355No protein-
 
Retained intron
--TSL:5
Itsn1-218ENSMUST00000139890.2352No protein-
 
Retained intron
--TSL:3
Description

sec1 family domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20726]

Gene Synonyms

C14orf163, KIAA0917, RA410, SLY1, STXBP1L2

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
SCFD1-203ENST00000458591.72190642aaENSP00000390783.2
 
Protein coding
CCDS9639Q8WVM8-1 NM_016106.4MANE Select v0.93Ensembl CanonicalGENCODE basicAPPRIS P2TSL:1
SCFD1-252ENST00000678124.14041575aaENSP00000503029.1
 
Protein coding
CCDS45092--GENCODE basic
SCFD1-207ENST00000544052.62058575aaENSP00000443010.2
 
Protein coding
CCDS45092Q8WVM8-3 -GENCODE basicTSL:2
SCFD1-202ENST00000396629.62021550aaENSP00000379870.2
 
Protein coding
CCDS58308Q8WVM8-2 -GENCODE basicTSL:2
SCFD1-205ENST00000469043.24736289aaENSP00000452448.2
 
Protein coding
-H0YJY1 -GENCODE basicTSL:2
SCFD1-241ENST00000677413.13486572aaENSP00000503070.1
 
Protein coding
---GENCODE basic
SCFD1-231ENST00000676812.13446612aaENSP00000504504.1
 
Protein coding
---GENCODE basic
SCFD1-256ENST00000678402.13424601aaENSP00000503444.1
 
Protein coding
---GENCODE basic
SCFD1-261ENST00000678669.13386592aaENSP00000504126.1
 
Protein coding
---GENCODE basic
SCFD1-227ENST00000676520.13374483aaENSP00000504658.1
 
Protein coding
---GENCODE basic
SCFD1-262ENST00000678716.13296483aaENSP00000503125.1
 
Protein coding
---GENCODE basic
SCFD1-259ENST00000678579.13260453aaENSP00000503776.1
 
Protein coding
---GENCODE basic
SCFD1-229ENST00000676674.13156457aaENSP00000502860.1
 
Protein coding
-B7Z5N7 -GENCODE basic
SCFD1-240ENST00000677340.12171616aaENSP00000504124.1
 
Protein coding
---GENCODE basic
SCFD1-226ENST00000676509.12126641aaENSP00000504739.1
 
Protein coding
---GENCODE basicAPPRIS ALT2
SCFD1-228ENST00000676658.11995620aaENSP00000503347.1
 
Protein coding
---GENCODE basic
SCFD1-271ENST00000679165.11962591aaENSP00000503787.1
 
Protein coding
---GENCODE basic
SCFD1-222ENST00000557076.61729513aaENSP00000450755.2
 
Protein coding
-G3V2M8 -GENCODE basicTSL:3
SCFD1-236ENST00000676954.11580291aaENSP00000504250.1
 
Protein coding
---GENCODE basic
SCFD1-210ENST00000553693.61538410aaENSP00000452308.2
 
Protein coding
-G3V5E2 -GENCODE basicTSL:3
SCFD1-267ENST00000679075.14347216aaENSP00000504582.1
 
Nonsense mediated decay
----
SCFD1-268ENST00000679096.13919448aaENSP00000503433.1
 
Nonsense mediated decay
----
SCFD1-225ENST00000676473.13589149aaENSP00000504489.1
 
Nonsense mediated decay
----
SCFD1-249ENST00000677974.13550108aaENSP00000503716.1
 
Nonsense mediated decay
----
SCFD1-234ENST00000676876.1344585aaENSP00000503666.1
 
Nonsense mediated decay
----
SCFD1-224ENST00000676465.1340638aaENSP00000503575.1
 
Nonsense mediated decay
----
SCFD1-247ENST00000677690.1327054aaENSP00000504114.1
 
Nonsense mediated decay
----
SCFD1-206ENST00000484733.6230855aaENSP00000452178.1
 
Nonsense mediated decay
-G3V551 -TSL:5
SCFD1-264ENST00000678760.12249422aaENSP00000504309.1
 
Nonsense mediated decay
----
SCFD1-246ENST00000677637.12138271aaENSP00000504375.1
 
Nonsense mediated decay
----
SCFD1-211ENST00000554437.62135465aaENSP00000450546.2
 
Nonsense mediated decay
-H0YIZ7 -TSL:3
SCFD1-238ENST00000677176.12135271aaENSP00000504074.1
 
Nonsense mediated decay
----
SCFD1-257ENST00000678475.12122369aaENSP00000504339.1
 
Nonsense mediated decay
----
SCFD1-254ENST00000678396.12105105aaENSP00000503724.1
 
Nonsense mediated decay
----
SCFD1-243ENST00000677456.12069271aaENSP00000503191.1
 
Nonsense mediated decay
----
SCFD1-255ENST00000678399.12062532aaENSP00000504310.1
 
Nonsense mediated decay
----
SCFD1-269ENST00000679102.12049487aaENSP00000503287.1
 
Nonsense mediated decay
----
SCFD1-201ENST00000311943.112016163aaENSP00000309417.7
 
Nonsense mediated decay
-J3KNG4 -TSL:2
SCFD1-233ENST00000676834.11970420aaENSP00000503338.1
 
Nonsense mediated decay
----
SCFD1-204ENST00000463622.6194348aaENSP00000451298.1
 
Nonsense mediated decay
-G3V3K9 -TSL:2
SCFD1-272ENST00000679342.11923271aaENSP00000504420.1
 
Nonsense mediated decay
----
SCFD1-235ENST00000676914.11870420aaENSP00000504271.1
 
Nonsense mediated decay
----
SCFD1-221ENST00000556768.5182975aaENSP00000451811.1
 
Nonsense mediated decay
-G3V4I1 -TSL:1
SCFD1-215ENST00000555259.51553121aaENSP00000452323.1
 
Nonsense mediated decay
-G3V5F3 -TSL:1
SCFD1-213ENST00000554776.5583102aaENSP00000452046.1
 
Nonsense mediated decay
-H0YJS6 -TSL:5CDS 5' incomplete
SCFD1-223ENST00000557713.555692aaENSP00000451064.1
 
Nonsense mediated decay
-G3V363 -TSL:4
SCFD1-212ENST00000554486.1819No protein-
 
Processed transcript
---TSL:3
SCFD1-214ENST00000554819.5608No protein-
 
Processed transcript
---TSL:5
SCFD1-260ENST00000678637.15328No protein-
 
Retained intron
----
SCFD1-237ENST00000677027.14584No protein-
 
Retained intron
----
SCFD1-258ENST00000678516.14241No protein-
 
Retained intron
----
SCFD1-270ENST00000679153.14175No protein-
 
Retained intron
----
SCFD1-265ENST00000678802.14171No protein-
 
Retained intron
----
SCFD1-266ENST00000678858.14154No protein-
 
Retained intron
----
SCFD1-245ENST00000677617.14125No protein-
 
Retained intron
----
SCFD1-263ENST00000678735.14025No protein-
 
Retained intron
----
SCFD1-239ENST00000677334.13857No protein-
 
Retained intron
----
SCFD1-253ENST00000678185.13312No protein-
 
Retained intron
----
SCFD1-230ENST00000676750.12705No protein-
 
Retained intron
----
SCFD1-250ENST00000678006.12372No protein-
 
Retained intron
----
SCFD1-232ENST00000676817.12358No protein-
 
Retained intron
----
SCFD1-244ENST00000677576.12147No protein-
 
Retained intron
----
SCFD1-251ENST00000678104.12025No protein-
 
Retained intron
----
SCFD1-248ENST00000677833.11813No protein-
 
Retained intron
----
SCFD1-242ENST00000677445.11470No protein-
 
Retained intron
----
SCFD1-219ENST00000556486.5974No protein-
 
Retained intron
---TSL:2
SCFD1-220ENST00000556534.1864No protein-
 
Retained intron
---TSL:5
SCFD1-208ENST00000553278.1795No protein-
 
Retained intron
---TSL:2
SCFD1-209ENST00000553280.1574No protein-
 
Retained intron
---TSL:2
SCFD1-216ENST00000555550.1541No protein-
 
Retained intron
---TSL:4
SCFD1-218ENST00000556413.1512No protein-
 
Retained intron
---TSL:3
SCFD1-217ENST00000556256.1428No protein-
 
Retained intron
---TSL:2
Description

cytoplasmic FMR1 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:13759]

Gene Synonyms

KIAA0068, P140SRA-1, SHYC

Location
Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
CYFIP1-208ENST00000617928.568261253aaENSP00000481038.1
 
Protein coding
CCDS73696Q7L576-1 NM_014608.6MANE Select v0.93Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
CYFIP1-207ENST00000617556.45674822aaENSP00000480525.1
 
Protein coding
CCDS73695Q7L576-2 -GENCODE basicTSL:1
CYFIP1-203ENST00000610365.445151253aaENSP00000478779.1
 
Protein coding
CCDS73696Q7L576-1 -GENCODE basicAPPRIS P1TSL:1
CYFIP1-202ENST00000561263.2707176aaENSP00000453060.1
 
Protein coding
-H0YL50 -TSL:2CDS 5' incomplete
CYFIP1-204ENST00000611832.4582151aaENSP00000478377.1
 
Protein coding
-A0A087WU52 -TSL:2CDS 3' incomplete
CYFIP1-205ENST00000612288.1553185aaENSP00000479802.1
 
Protein coding
-A0A087WVZ5 -TSL:3CDS 5' and 3' incomplete
CYFIP1-206ENST00000613006.4544161aaENSP00000480307.1
 
Protein coding
-A0A087WWL1 -TSL:4CDS 3' incomplete
CYFIP1-214ENST00000622576.158345aaENSP00000482459.1
 
Nonsense mediated decay
-A0A087WZ89 -TSL:4CDS 5' incomplete
CYFIP1-209ENST00000619037.157577aaENSP00000480596.1
 
Nonsense mediated decay
-A0A087WWY5 -TSL:4
CYFIP1-211ENST00000619348.43471No protein-
 
Retained intron
---TSL:1
CYFIP1-210ENST00000619290.4929No protein-
 
Retained intron
---TSL:1
CYFIP1-212ENST00000621036.4585No protein-
 
Retained intron
---TSL:3
CYFIP1-213ENST00000621105.1514No protein-
 
Retained intron
---TSL:2
CYFIP1-201ENST00000557890.1408No protein-
 
Retained intron
---TSL:2
Description

tubulin tyrosine ligase like 4 [Source:HGNC Symbol;Acc:HGNC:28976]

Gene Synonyms

KIAA0173

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
TTLL4-202ENST00000392102.650071199aaENSP00000375951.1
 
Protein coding
CCDS2422A0A024R424 Q14679 NM_014640.5MANE Select v0.93Ensembl CanonicalGENCODE basicAPPRIS P2TSL:1
TTLL4-201ENST00000258398.847301199aaENSP00000258398.4
 
Protein coding
CCDS2422A0A024R424 Q14679 -GENCODE basicAPPRIS P2TSL:2
TTLL4-210ENST00000442769.539711135aaENSP00000396555.1
 
Protein coding
-E7EX20 -GENCODE basicTSL:5
TTLL4-212ENST00000457313.53723973aaENSP00000393332.1
 
Protein coding
-E9PH58 -GENCODE basicAPPRIS ALT2TSL:2
TTLL4-209ENST00000437755.1747174aaENSP00000391342.1
 
Protein coding
-C9J3I1 -TSL:3CDS 3' incomplete
TTLL4-208ENST00000436668.5738246aaENSP00000415845.1
 
Protein coding
-H7C470 -TSL:5CDS 5' and 3' incomplete
TTLL4-203ENST00000415717.5712101aaENSP00000411228.1
 
Protein coding
-C9J982 -TSL:3CDS 3' incomplete
TTLL4-205ENST00000417855.1601162aaENSP00000400068.1
 
Protein coding
-H7C1F7 -TSL:3CDS 5' incomplete
TTLL4-206ENST00000424644.1588100aaENSP00000405485.1
 
Protein coding
-C9JB60 -TSL:4CDS 3' incomplete
TTLL4-211ENST00000448224.1583194aaENSP00000392103.1
 
Protein coding
-H7BZY4 -TSL:5CDS 5' and 3' incomplete
TTLL4-204ENST00000417196.5811179aaENSP00000415197.1
 
Nonsense mediated decay
-H7C421 -TSL:5CDS 5' incomplete
TTLL4-207ENST00000434241.1476100aaENSP00000407434.1
 
Nonsense mediated decay
-H7C2S3 -TSL:5CDS 5' incomplete
TTLL4-219ENST00000480929.12421No protein-
 
Retained intron
---TSL:2
TTLL4-214ENST00000465558.51688No protein-
 
Retained intron
---TSL:2
TTLL4-215ENST00000467841.5973No protein-
 
Retained intron
---TSL:4
TTLL4-221ENST00000494428.5829No protein-
 
Retained intron
---TSL:3
TTLL4-218ENST00000480472.5765No protein-
 
Retained intron
---TSL:4
TTLL4-213ENST00000461181.1590No protein-
 
Retained intron
---TSL:4
TTLL4-220ENST00000491899.1589No protein-
 
Retained intron
---TSL:4
TTLL4-217ENST00000475950.5587No protein-
 
Retained intron
---TSL:3
TTLL4-216ENST00000472527.1544No protein-
 
Retained intron
---TSL:2
Statistics

Exons: 3, Coding exons: 0, Transcript length: 587 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000475950.5

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript-based displays

    HASH(0x24721c40)