Human (GRCh38.p14)
Description

beta-1,4-N-acetyl-galactosaminyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:4117]

Gene Synonyms

BETA1-4GALNAC-T, GALGT, SPG26

Location
About this transcript

This transcript has 5 exons, is annotated with 1 domain and feature, is associated with 1165 variant alleles and maps to 84 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000341156.9B4GALNT1-2015368533aaENSP00000341562.4
 
Protein coding
CCDS8950Q00973-1 NM_001478.5MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000550764.5B4GALNT1-2081967328aaENSP00000450303.1
 
Protein coding
CCDS61171Q00973-3 -GENCODE basicTSL:1
ENST00000418555.6B4GALNT1-2021861478aaENSP00000401601.2
 
Protein coding
CCDS61170Q00973-2 -GENCODE basicTSL:2
ENST00000552350.5B4GALNT1-2131649328aaENSP00000448500.1
 
Protein coding
CCDS61171Q00973-3 -GENCODE basicTSL:4
ENST00000449184.7B4GALNT1-2031633304aaENSP00000473533.1
 
Protein coding
B4DSP5 -GENCODE basicTSL:2
ENST00000548888.5B4GALNT1-206841237aaENSP00000447945.1
 
Protein coding
F8VU35 -TSL:4CDS 3' incomplete
ENST00000551220.1B4GALNT1-210837120aaENSP00000446566.1
 
Protein coding
F8VR44 -TSL:4CDS 3' incomplete
ENST00000547741.1B4GALNT1-204453151aaENSP00000448577.1
 
Protein coding
H0YI57 -TSL:4CDS 5' and 3' incomplete
ENST00000552798.5B4GALNT1-2151945231aaENSP00000447076.1
 
Nonsense mediated decay
F8W1A7 -TSL:5
ENST00000549391.5B4GALNT1-207879127aaENSP00000447750.1
 
Nonsense mediated decay
H0YHT1 -TSL:3CDS 5' incomplete
ENST00000548487.5B4GALNT1-20556281aaENSP00000449534.1
 
Nonsense mediated decay
F8VW33 -TSL:4
ENST00000552219.5B4GALNT1-21250296aaENSP00000448340.1
 
Nonsense mediated decay
F8VSE0 -TSL:3
ENST00000550943.1B4GALNT1-209482No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000553142.5B4GALNT1-2165580No protein-
 
Retained intron
--TSL:2
ENST00000552468.1B4GALNT1-2142538No protein-
 
Retained intron
--TSL:2
ENST00000551925.1B4GALNT1-2111003No protein-
 
Retained intron
--TSL:2
Statistics

Exons: 5, Coding exons: 3, Transcript length: 562 bps, Translation length: 81 residues

Transcript Support Level (TSL)

TSL:4

Version

ENST00000548487.5

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.