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Description

serine hydroxymethyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:10852]

Gene Synonyms

SHMT

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000328923.8SHMT2-2012157504aaENSP00000333667.3
 
Protein coding
CCDS8934P34897-1 NM_005412.6MANE Select v0.95Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000449049.7SHMT2-2032121483aaENSP00000413770.3
 
Protein coding
CCDS53805P34897-3 -GENCODE basicTSL:2
ENST00000414700.7SHMT2-2022006483aaENSP00000406881.3
 
Protein coding
CCDS53805P34897-3 -GENCODE basicTSL:1
ENST00000557487.5SHMT2-2321918494aaENSP00000452315.1
 
Protein coding
CCDS55837P34897-2 -GENCODE basicTSL:1
ENST00000553474.5SHMT2-2051765483aaENSP00000452419.1
 
Protein coding
CCDS53805P34897-3 -GENCODE basicTSL:2
ENST00000557529.1SHMT2-2331369264aaENSP00000450490.1
 
Protein coding
-H0YIZ0 -TSL:2CDS 5' incomplete
ENST00000555634.5SHMT2-220964234aaENSP00000450930.1
 
Protein coding
-G3V2Y4 -TSL:5CDS 3' incomplete
ENST00000554975.5SHMT2-216780215aaENSP00000452404.1
 
Protein coding
-G3V5L0 -TSL:3CDS 3' incomplete
ENST00000556689.5SHMT2-223768237aaENSP00000452035.1
 
Protein coding
-G3V4W5 -TSL:3CDS 3' incomplete
ENST00000555773.5SHMT2-221600149aaENSP00000451968.1
 
Protein coding
-G3V4T0 -TSL:2CDS 3' incomplete
ENST00000554310.5SHMT2-211579160aaENSP00000450893.1
 
Protein coding
-G3V2W0 -TSL:4CDS 3' incomplete
ENST00000556737.1SHMT2-224572147aaENSP00000451495.1
 
Protein coding
-G3V3Y8 -TSL:2CDS 3' incomplete
ENST00000557427.5SHMT2-230569159aaENSP00000452045.1
 
Protein coding
-G3V4X0 -TSL:4CDS 3' incomplete
ENST00000553529.5SHMT2-206562147aaENSP00000452161.1
 
Protein coding
-G3V3Y8 -TSL:4CDS 3' incomplete
ENST00000557703.5SHMT2-234542142aaENSP00000450452.1
 
Protein coding
-G3V241 -TSL:4CDS 3' incomplete
ENST00000555774.5SHMT2-222231165aaENSP00000451872.1
 
Nonsense mediated decay
-G3V2Y1 -TSL:1
ENST00000556825.5SHMT2-226221586aaENSP00000451169.1
 
Nonsense mediated decay
-G3V3C6 -TSL:1
ENST00000553837.5SHMT2-2072152192aaENSP00000451371.1
 
Nonsense mediated decay
-G3V540 -TSL:5
ENST00000557433.5SHMT2-2311904171aaENSP00000450610.1
 
Nonsense mediated decay
-G3V2E4 -TSL:1
ENST00000555116.5SHMT2-217188565aaENSP00000452339.1
 
Nonsense mediated decay
-G3V2Y1 -TSL:2
ENST00000557348.5SHMT2-229165965aaENSP00000450927.1
 
Nonsense mediated decay
-G3V2Y1 -TSL:2
ENST00000555563.5SHMT2-21989586aaENSP00000451630.1
 
Nonsense mediated decay
-G3V3C6 -TSL:5
ENST00000554604.5SHMT2-214879192aaENSP00000452163.1
 
Nonsense mediated decay
-G3V540 -TSL:5
ENST00000557269.5SHMT2-22757652aaENSP00000450594.1
 
Nonsense mediated decay
-G3V2D2 -TSL:5
ENST00000554600.5SHMT2-213837No protein-
 
Processed transcript
---TSL:2
ENST00000554656.5SHMT2-215817No protein-
 
Processed transcript
---TSL:3
ENST00000557740.5SHMT2-235569No protein-
 
Processed transcript
---TSL:4
ENST00000553949.1SHMT2-209552No protein-
 
Processed transcript
---TSL:3
ENST00000554467.5SHMT2-2123416No protein-
 
Retained intron
---TSL:2
ENST00000553868.1SHMT2-208941No protein-
 
Retained intron
---TSL:2
ENST00000555213.1SHMT2-218611No protein-
 
Retained intron
---TSL:3
ENST00000553950.5SHMT2-210584No protein-
 
Retained intron
---TSL:2
ENST00000553324.5SHMT2-204566No protein-
 
Retained intron
---TSL:4
ENST00000556798.1SHMT2-225525No protein-
 
Retained intron
---TSL:2
ENST00000557302.1SHMT2-228457No protein-
 
Retained intron
---TSL:3
Description

small nucleolar RNA host gene 1 [Source:HGNC Symbol;Acc:HGNC:32688]

Gene Synonyms

LINC00057, NCRNA00057, UHG, lncRNA16

Location
Gene
Transcript IDNamebpProteinTranslation IDBiotypeCCDSRefSeq MatchFlags
ENST00000665371.1SNHG1-2453294No protein-
 
Retained intron
---
ENST00000535076.6SNHG1-2012812No protein-
 
Retained intron
--TSL:2
ENST00000537965.6SNHG1-2072772No protein-
 
Retained intron
--TSL:5
ENST00000538654.6SNHG1-2092769No protein-
 
Retained intron
--TSL:2
ENST00000661616.1SNHG1-2372336No protein-
 
Retained intron
---
ENST00000535689.6SNHG1-2022173No protein-
 
Retained intron
--TSL:2
ENST00000541416.6SNHG1-2162078No protein-
 
Retained intron
--TSL:2
ENST00000537024.6SNHG1-2031727No protein-
 
Retained intron
--TSL:5
ENST00000544550.6SNHG1-2201689No protein-
 
Retained intron
--TSL:2
ENST00000540865.5SNHG1-214784No protein-
 
Retained intron
--TSL:5
ENST00000545308.5SNHG1-222646No protein-
 
Retained intron
--TSL:2
ENST00000545688.5SNHG1-224610No protein-
 
Retained intron
--TSL:3
ENST00000540904.1SNHG1-215594No protein-
 
Retained intron
--TSL:5
ENST00000689147.1SNHG1-2661162No protein-
 
lncRNA
--Ensembl Canonical
ENST00000656268.1SNHG1-2313771No protein-
 
lncRNA
---
ENST00000545920.2SNHG1-2253527No protein-
 
lncRNA
--TSL:2
ENST00000660960.1SNHG1-2363500No protein-
 
lncRNA
---
ENST00000655919.1SNHG1-2283489No protein-
 
lncRNA
---
ENST00000668309.1SNHG1-2493302No protein-
 
lncRNA
--GENCODE basic
ENST00000664307.1SNHG1-2443228No protein-
 
lncRNA
---
ENST00000663237.1SNHG1-2423119No protein-
 
lncRNA
---
ENST00000665512.1SNHG1-2463065No protein-
 
lncRNA
---
ENST00000652879.1SNHG1-2262982No protein-
 
lncRNA
---
ENST00000671236.1SNHG1-2542843No protein-
 
lncRNA
---
ENST00000670729.1SNHG1-2532763No protein-
 
lncRNA
---
ENST00000662400.1SNHG1-2402560No protein-
 
lncRNA
---
ENST00000670469.1SNHG1-2512470No protein-
 
lncRNA
---
ENST00000656240.1SNHG1-2292456No protein-
 
lncRNA
---
ENST00000661936.1SNHG1-2382345No protein-
 
lncRNA
---
ENST00000662229.1SNHG1-2392309No protein-
 
lncRNA
---
ENST00000656589.1SNHG1-2322152No protein-
 
lncRNA
---
ENST00000544983.2SNHG1-2211968No protein-
 
lncRNA
--TSL:2
ENST00000660730.1SNHG1-2351944No protein-
 
lncRNA
--GENCODE basic
ENST00000656241.1SNHG1-2301828No protein-
 
lncRNA
---
ENST00000660547.1SNHG1-2341785No protein-
 
lncRNA
---
ENST00000667655.1SNHG1-2471782No protein-
 
lncRNA
---
ENST00000670502.1SNHG1-2521752No protein-
 
lncRNA
--GENCODE basic
ENST00000692454.1SNHG1-2721735No protein-
 
lncRNA
--GENCODE basic
ENST00000691324.1SNHG1-2711551No protein-
 
lncRNA
---
ENST00000658540.1SNHG1-2331513No protein-
 
lncRNA
---
ENST00000537925.5SNHG1-2061487No protein-
 
lncRNA
--TSL:1
ENST00000653690.1SNHG1-2271438No protein-
 
lncRNA
---
ENST00000540725.6SNHG1-2131394No protein-
 
lncRNA
--TSL:1
ENST00000663092.1SNHG1-2411320No protein-
 
lncRNA
---
ENST00000688102.1SNHG1-2651300No protein-
 
lncRNA
---
ENST00000687029.1SNHG1-2631282No protein-
 
lncRNA
---
ENST00000663967.1SNHG1-2431202No protein-
 
lncRNA
---
ENST00000668048.1SNHG1-2481158No protein-
 
lncRNA
---
ENST00000686478.1SNHG1-2591147No protein-
 
lncRNA
---
ENST00000686670.1SNHG1-2611132No protein-
 
lncRNA
---
ENST00000670323.1SNHG1-2501112No protein-
 
lncRNA
---
ENST00000539921.7SNHG1-2111105No protein-
 
lncRNA
--TSL:2
ENST00000685229.1SNHG1-2551100No protein-
 
lncRNA
---
ENST00000692887.1SNHG1-2731092No protein-
 
lncRNA
---
ENST00000685577.1SNHG1-2561089No protein-
 
lncRNA
---
ENST00000686500.1SNHG1-2601073No protein-
 
lncRNA
---
ENST00000691255.1SNHG1-2701073No protein-
 
lncRNA
---
ENST00000537869.6SNHG1-2051069No protein-
 
lncRNA
--TSL:3
ENST00000687243.1SNHG1-2641033No protein-
 
lncRNA
---
ENST00000686081.1SNHG1-2581018No protein-
 
lncRNA
---
ENST00000686740.1SNHG1-2621011No protein-
 
lncRNA
---
ENST00000686008.1SNHG1-257988No protein-
 
lncRNA
---
ENST00000693734.1SNHG1-274974No protein-
 
lncRNA
---
ENST00000690476.1SNHG1-268964No protein-
 
lncRNA
---
ENST00000539975.5SNHG1-212955No protein-
 
lncRNA
--TSL:5
ENST00000690542.1SNHG1-269935No protein-
 
lncRNA
---
ENST00000541578.6SNHG1-217897No protein-
 
lncRNA
--TSL:3
ENST00000539303.6SNHG1-210897No protein-
 
lncRNA
--TSL:3
ENST00000689664.1SNHG1-267843No protein-
 
lncRNA
---
ENST00000542112.5SNHG1-219780No protein-
 
lncRNA
--TSL:3
ENST00000545440.5SNHG1-223754No protein-
 
lncRNA
--TSL:2
ENST00000541615.5SNHG1-218748No protein-
 
lncRNA
--TSL:5
ENST00000537068.5SNHG1-204629No protein-
 
lncRNA
--TSL:5
ENST00000538266.5SNHG1-208347No protein-
 
lncRNA
--TSL:3
Transcript IDNamebpProteinTranslation IDBiotypeCCDSFlags
ENSMUST00000177921.2-1500500aaENSMUSP00000137421.2
 
Protein coding
-GENCODE basicTSL:NA
Description

mitochondrial tRNA translation optimization 1 [Source:HGNC Symbol;Acc:HGNC:19261]

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000498286.6MTO1-21210698692aaENSP00000419561.2
 
Protein coding
CCDS34485Q9Y2Z2-4 NM_012123.4MANE Select v0.95Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000370300.8MTO1-2012961717aaENSP00000359323.4
 
Protein coding
CCDS4979Q9Y2Z2-1 -GENCODE basicTSL:1
ENST00000415954.6MTO1-2052837732aaENSP00000402038.2
 
Protein coding
CCDS47452Q9Y2Z2-6 -GENCODE basicTSL:1
ENST00000680686.1MTO1-2523618618aaENSP00000506609.1
 
Protein coding
---GENCODE basic
ENST00000681204.1MTO1-2623616589aaENSP00000505819.1
 
Protein coding
---GENCODE basic
ENST00000681500.1MTO1-2703489598aaENSP00000506439.1
 
Protein coding
---CDS 5' incomplete
ENST00000370305.5MTO1-2022174643aaENSP00000359328.1
 
Protein coding
-Q9Y2Z2-5 -GENCODE basicTSL:1
ENST00000521156.6MTO1-2152116515aaENSP00000428863.2
 
Protein coding
-H0YB81 -GENCODE basicTSL:2
ENST00000679411.1MTO1-2214239184aaENSP00000506532.1
 
Nonsense mediated decay
----
ENST00000681254.1MTO1-2644103184aaENSP00000506575.1
 
Nonsense mediated decay
----
ENST00000681890.1MTO1-2784070425aaENSP00000505751.1
 
Nonsense mediated decay
----
ENST00000681094.1MTO1-2594049432aaENSP00000505394.1
 
Nonsense mediated decay
----
ENST00000679604.1MTO1-2264015327aaENSP00000506268.1
 
Nonsense mediated decay
----
ENST00000680794.1MTO1-2554011184aaENSP00000506362.1
 
Nonsense mediated decay
----
ENST00000681165.1MTO1-2613998184aaENSP00000506088.1
 
Nonsense mediated decay
----
ENST00000679524.1MTO1-2233995287aaENSP00000505038.1
 
Nonsense mediated decay
----
ENST00000680238.1MTO1-2413987184aaENSP00000506260.1
 
Nonsense mediated decay
----
ENST00000679592.1MTO1-225397395aaENSP00000505736.1
 
Nonsense mediated decay
----
ENST00000681294.1MTO1-2673967316aaENSP00000505615.1
 
Nonsense mediated decay
----
ENST00000679627.1MTO1-2283945401aaENSP00000505373.1
 
Nonsense mediated decay
----
ENST00000680131.1MTO1-2393906425aaENSP00000505906.1
 
Nonsense mediated decay
----
ENST00000679808.1MTO1-2323890358aaENSP00000506127.1
 
Nonsense mediated decay
----
ENST00000681624.1MTO1-275388475aaENSP00000505820.1
 
Nonsense mediated decay
----
ENST00000680758.1MTO1-253384595aaENSP00000505192.1
 
Nonsense mediated decay
----
ENST00000679352.1MTO1-2193830192aaENSP00000505776.1
 
Nonsense mediated decay
----
ENST00000680875.1MTO1-2573806432aaENSP00000506042.1
 
Nonsense mediated decay
----
ENST00000680428.1MTO1-2463787316aaENSP00000506210.1
 
Nonsense mediated decay
----
ENST00000680544.1MTO1-2473774184aaENSP00000506702.1
 
Nonsense mediated decay
----
ENST00000679675.1MTO1-2293765463aaENSP00000505458.1
 
Nonsense mediated decay
----
ENST00000679591.1MTO1-224376455aaENSP00000505656.1
 
Nonsense mediated decay
---CDS 5' incomplete
ENST00000681932.1MTO1-2793745184aaENSP00000505826.1
 
Nonsense mediated decay
----
ENST00000681620.1MTO1-2743740401aaENSP00000505386.1
 
Nonsense mediated decay
----
ENST00000679418.1MTO1-2223721110aaENSP00000505278.1
 
Nonsense mediated decay
-E7EWX0 --
ENST00000680289.1MTO1-2433720110aaENSP00000505097.1
 
Nonsense mediated decay
-E7EWX0 --
ENST00000681337.1MTO1-2683716358aaENSP00000506108.1
 
Nonsense mediated decay
----
ENST00000680034.1MTO1-2383714192aaENSP00000505785.1
 
Nonsense mediated decay
----
ENST00000679905.1MTO1-2353690438aaENSP00000505787.1
 
Nonsense mediated decay
----
ENST00000679947.1MTO1-2363650327aaENSP00000506630.1
 
Nonsense mediated decay
----
ENST00000681509.1MTO1-2713629351aaENSP00000506571.1
 
Nonsense mediated decay
----
ENST00000680902.1MTO1-2583617327aaENSP00000505813.1
 
Nonsense mediated decay
----
ENST00000679364.1MTO1-2203610192aaENSP00000505626.1
 
Nonsense mediated decay
----
ENST00000681141.1MTO1-2603558110aaENSP00000506035.1
 
Nonsense mediated decay
-E7EWX0 --
ENST00000681267.1MTO1-2653523358aaENSP00000506570.1
 
Nonsense mediated decay
----
ENST00000681610.1MTO1-2733518427aaENSP00000505229.1
 
Nonsense mediated decay
----
ENST00000679730.1MTO1-2303492192aaENSP00000506698.1
 
Nonsense mediated decay
----
ENST00000680563.1MTO1-248343041aaENSP00000505374.1
 
Nonsense mediated decay
---CDS 5' incomplete
ENST00000680775.1MTO1-254342567aaENSP00000505199.1
 
Nonsense mediated decay
----
ENST00000681579.1MTO1-2723407364aaENSP00000505732.1
 
Nonsense mediated decay
----
ENST00000679900.1MTO1-2343366206aaENSP00000505653.1
 
Nonsense mediated decay
----
ENST00000680609.1MTO1-2513328118aaENSP00000505053.1
 
Nonsense mediated decay
----
ENST00000681438.1MTO1-2693210192aaENSP00000505135.1
 
Nonsense mediated decay
----
ENST00000681705.1MTO1-2772685425aaENSP00000506381.1
 
Nonsense mediated decay
----
ENST00000681691.1MTO1-2762585603aaENSP00000505613.1
 
Nonsense mediated decay
----
ENST00000680601.1MTO1-250254095aaENSP00000506582.1
 
Nonsense mediated decay
----
ENST00000524046.2MTO1-2182529184aaENSP00000430660.2
 
Nonsense mediated decay
-H0YC00 -TSL:3
ENST00000522205.6MTO1-2162488184aaENSP00000428903.2
 
Nonsense mediated decay
-E5RFF7 -TSL:4
ENST00000680841.1MTO1-256225454aaENSP00000506524.1
 
Nonsense mediated decay
---CDS 5' incomplete
ENST00000415228.5MTO1-2042240192aaENSP00000416397.1
 
Nonsense mediated decay
-E7EWI1 -TSL:5
ENST00000679870.1MTO1-2332213110aaENSP00000505401.1
 
Nonsense mediated decay
-E7EWX0 --
ENST00000445187.6MTO1-2072114192aaENSP00000407580.2
 
Nonsense mediated decay
-H7C2S9 -TSL:3
ENST00000523763.2MTO1-2172048565aaENSP00000429595.2
 
Nonsense mediated decay
-H0YBI9 -TSL:2
ENST00000442897.7MTO1-2061863118aaENSP00000396529.2
 
Nonsense mediated decay
-E9PHR8 -TSL:4
ENST00000518210.5MTO1-213545No protein-
 
Processed transcript
---TSL:4
ENST00000680266.1MTO1-2424300No protein-
 
Retained intron
----
ENST00000680570.1MTO1-2494147No protein-
 
Retained intron
----
ENST00000681284.1MTO1-2664136No protein-
 
Retained intron
----
ENST00000680405.1MTO1-2454103No protein-
 
Retained intron
----
ENST00000681212.1MTO1-2634047No protein-
 
Retained intron
----
ENST00000680195.1MTO1-2403968No protein-
 
Retained intron
----
ENST00000679993.1MTO1-2373850No protein-
 
Retained intron
----
ENST00000680350.1MTO1-2443759No protein-
 
Retained intron
----
ENST00000679612.1MTO1-2272640No protein-
 
Retained intron
----
ENST00000370308.8MTO1-2032621No protein-
 
Retained intron
---TSL:1
ENST00000462039.5MTO1-2082416No protein-
 
Retained intron
---TSL:2
ENST00000679763.1MTO1-2312383No protein-
 
Retained intron
----
ENST00000487960.2MTO1-2112357No protein-
 
Retained intron
---TSL:3
ENST00000521032.6MTO1-2141518No protein-
 
Retained intron
---TSL:4
ENST00000485082.2MTO1-2101137No protein-
 
Retained intron
---TSL:2
ENST00000466977.1MTO1-209451No protein-
 
Retained intron
---TSL:2
Statistics

Exons: 10, Coding exons: 3, Transcript length: 1,863 bps, Translation length: 118 residues

Transcript Support Level (TSL)

TSL:4

Version

ENST00000442897.7

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript-based displays

    HASH(0x28985620)