Human (GRCh38.p14)
Description

SRY-box transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:11201]

Gene Synonyms

L-SOX5, MGC35153

Location
About this transcript

This transcript has 13 exons, is annotated with 1 domain and feature, is associated with 186586 variant alleles and maps to 320 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000451604.7SOX5-2067076763aaENSP00000398273.2
 
Protein coding
CCDS8699P35711-1 NM_006940.6MANE SelectEnsembl CanonicalGENCODE basicAPPRIS ALT1TSL:1
ENST00000646273.1SOX5-2182810642aaENSP00000493866.1
 
Protein coding
CCDS58216P35711-4 -GENCODE basic
ENST00000537393.5SOX5-2132769728aaENSP00000439832.1
 
Protein coding
CCDS81672F5H0I3 -GENCODE basicAPPRIS P4TSL:5
ENST00000545921.5SOX5-2172589753aaENSP00000443520.1
 
Protein coding
CCDS58217P35711-5 -GENCODE basicAPPRIS ALT1TSL:2
ENST00000704299.1SOX5-2222554715aaENSP00000515823.1
 
Protein coding
T2CZM2 -GENCODE basic
ENST00000704296.1SOX5-2191633347aaENSP00000515820.1
 
Protein coding
A0A994J7C0 -GENCODE basic
ENST00000396007.6SOX5-2021379377aaENSP00000379328.2
 
Protein coding
CCDS41761P35711-3 -GENCODE basicTSL:1
ENST00000704300.1SOX5-2231062229aaENSP00000515824.1
 
Protein coding
A0A994J4I4 -CDS 3' incomplete
ENST00000441133.2SOX5-204638128aaENSP00000393240.2
 
Protein coding
G3V0H1 -GENCODE basicTSL:2
ENST00000538083.1SOX5-214617144aaENSP00000441579.1
 
Protein coding
F5GWL1 -TSL:4CDS 3' incomplete
ENST00000536729.2SOX5-210587107aaENSP00000496161.1
 
Protein coding
A0A2R8Y7P3 -TSL:5CDS 3' incomplete
ENST00000446891.7SOX5-20558157aaENSP00000494627.1
 
Protein coding
A0A2R8Y5Q1 -TSL:5CDS 3' incomplete
ENST00000704298.1SOX5-2212809377aaENSP00000515822.1
 
Nonsense mediated decay
A0A994J6X9 --
ENST00000704297.1SOX5-220222584aaENSP00000515821.1
 
Nonsense mediated decay
A0A994J4A9 --
ENST00000367206.7SOX5-2011816509aaENSP00000356174.3
 
Nonsense mediated decay
I3L0A5 -TSL:2
ENST00000538905.1SOX5-215832No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000536850.1SOX5-211606No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000535530.5SOX5-208576No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000456299.2SOX5-207576No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000536629.5SOX5-209570No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000429944.6SOX5-203559No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000542241.5SOX5-216376No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000536911.1SOX5-212855No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 13, Coding exons: 12, Transcript length: 1,816 bps, Translation length: 509 residues

Transcript Support Level (TSL)

TSL:2

Version

ENST00000367206.7

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.