Human (GRCh38.p14)
Description

lysine demethylase 5C [Source:HGNC Symbol;Acc:HGNC:11114]

Gene Synonyms

DXS1272E, JARID1C, MRX13, SMCX, XE169

Location
About this transcript

This transcript has 26 exons, is annotated with 49 domains and features, is associated with 13423 variant alleles and maps to 832 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000375401.8KDM5C-20458101560aaENSP00000364550.4
 
Protein coding
CCDS14351P41229-1 NM_004187.5MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P5TSL:1
ENST00000452825.7KDM5C-20860961379aaENSP00000445176.1
 
Protein coding
CCDS55417P41229-4 -GENCODE basicTSL:5
ENST00000404049.7KDM5C-20556771559aaENSP00000385394.3
 
Protein coding
CCDS65269P41229-5 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000375379.7KDM5C-20252451557aaENSP00000364528.3
 
Protein coding
CCDS87747P41229-2 -GENCODE basicAPPRIS ALT2TSL:5
ENST00000688699.1KDM5C-22151701444aaENSP00000510430.1
 
Protein coding
CCDS94611A0A8I5KYW1 -GENCODE basicAPPRIS ALT2
ENST00000375383.7KDM5C-20351221516aaENSP00000364532.3
 
Protein coding
P41229-3 -GENCODE basicTSL:5
ENST00000685641.1KDM5C-21849781449aaENSP00000509818.1
 
Protein coding
CCDS94610A0A8I5KTT1 -GENCODE basicAPPRIS ALT2
ENST00000691505.1KDM5C-22248071450aaENSP00000510354.1
 
Protein coding
A0A8I5KXH7 -GENCODE basicAPPRIS ALT2
ENST00000693277.1KDM5C-22345121288aaENSP00000510522.1
 
Protein coding
A0A8I5QL21 -GENCODE basic
ENST00000687695.1KDM5C-21950611436aaENSP00000508631.1
 
Nonsense mediated decay
A0A8I5KQR8 --
ENST00000685423.1KDM5C-21647491449aaENSP00000508806.1
 
Nonsense mediated decay
A0A8I5KPH7 --
ENST00000429877.5KDM5C-20787053aaENSP00000409757.1
 
Nonsense mediated decay
F8WDK1 -TSL:3
ENST00000428012.1KDM5C-20676699aaENSP00000407277.1
 
Nonsense mediated decay
F8WF56 -TSL:3
ENST00000349663.6KDM5C-201548No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000467093.1KDM5C-210446No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000477109.1KDM5C-211297No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000465402.2KDM5C-2093833No protein-
 
Retained intron
--TSL:3
ENST00000685539.1KDM5C-2173553No protein-
 
Retained intron
---
ENST00000687928.1KDM5C-2203539No protein-
 
Retained intron
---
ENST00000497100.5KDM5C-2141403No protein-
 
Retained intron
--TSL:5
ENST00000481369.1KDM5C-2121361No protein-
 
Retained intron
--TSL:2
ENST00000495519.1KDM5C-213600No protein-
 
Retained intron
--TSL:3
ENST00000497995.1KDM5C-215394No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 26, Coding exons: 26, Transcript length: 5,677 bps, Translation length: 1,559 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P41229

CCDS

This transcript is a member of the Human CCDS set: CCDS65269

Transcript Support Level (TSL)

TSL:1

Version

ENST00000404049.7

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.