Human (GRCh38.p14)
Description

lysine demethylase 5C [Source:HGNC Symbol;Acc:HGNC:11114]

Gene Synonyms

DXS1272E, JARID1C, MRX13, SMCX, XE169

Location
About this transcript

This transcript has 5 exons, is annotated with 1 domain and feature, is associated with 2468 variant alleles and maps to 125 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000375401.8KDM5C-20458101560aaENSP00000364550.4
 
Protein coding
CCDS14351P41229-1 NM_004187.5MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P5TSL:1
ENST00000452825.7KDM5C-20860961379aaENSP00000445176.1
 
Protein coding
CCDS55417P41229-4 -GENCODE basicTSL:5
ENST00000404049.7KDM5C-20556771559aaENSP00000385394.3
 
Protein coding
CCDS65269P41229-5 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000375379.7KDM5C-20252451557aaENSP00000364528.3
 
Protein coding
CCDS87747P41229-2 -GENCODE basicAPPRIS ALT2TSL:5
ENST00000688699.1KDM5C-22151701444aaENSP00000510430.1
 
Protein coding
CCDS94611A0A8I5KYW1 -GENCODE basicAPPRIS ALT2
ENST00000375383.7KDM5C-20351221516aaENSP00000364532.3
 
Protein coding
P41229-3 -GENCODE basicTSL:5
ENST00000685641.1KDM5C-21849781449aaENSP00000509818.1
 
Protein coding
CCDS94610A0A8I5KTT1 -GENCODE basicAPPRIS ALT2
ENST00000691505.1KDM5C-22248071450aaENSP00000510354.1
 
Protein coding
A0A8I5KXH7 -GENCODE basicAPPRIS ALT2
ENST00000693277.1KDM5C-22345121288aaENSP00000510522.1
 
Protein coding
A0A8I5QL21 -GENCODE basic
ENST00000687695.1KDM5C-21950611436aaENSP00000508631.1
 
Nonsense mediated decay
A0A8I5KQR8 --
ENST00000685423.1KDM5C-21647491449aaENSP00000508806.1
 
Nonsense mediated decay
A0A8I5KPH7 --
ENST00000429877.5KDM5C-20787053aaENSP00000409757.1
 
Nonsense mediated decay
F8WDK1 -TSL:3
ENST00000428012.1KDM5C-20676699aaENSP00000407277.1
 
Nonsense mediated decay
F8WF56 -TSL:3
ENST00000349663.6KDM5C-201548No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000467093.1KDM5C-210446No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000477109.1KDM5C-211297No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000465402.2KDM5C-2093833No protein-
 
Retained intron
--TSL:3
ENST00000685539.1KDM5C-2173553No protein-
 
Retained intron
---
ENST00000687928.1KDM5C-2203539No protein-
 
Retained intron
---
ENST00000497100.5KDM5C-2141403No protein-
 
Retained intron
--TSL:5
ENST00000481369.1KDM5C-2121361No protein-
 
Retained intron
--TSL:2
ENST00000495519.1KDM5C-213600No protein-
 
Retained intron
--TSL:3
ENST00000497995.1KDM5C-215394No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 5, Coding exons: 2, Transcript length: 870 bps, Translation length: 53 residues

Transcript Support Level (TSL)

TSL:3

Version

ENST00000429877.5

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.