Human (GRCh38.p14)
Description

CCR4-NOT transcription complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:7877]

Gene Synonyms

AD-005, CDC39, KIAA1007, NOT1, NOT1H

Location
About this transcript

This transcript has 49 exons, is annotated with 54 domains and features, is associated with 51769 variant alleles and maps to 1420 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000317147.10CNOT1-20184112376aaENSP00000320949.5
 
Protein coding
CCDS10799A5YKK6-1 NM_016284.5MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P3TSL:1
ENST00000569240.5CNOT1-21676602371aaENSP00000455635.1
 
Protein coding
CCDS58468A5YKK6-2 -GENCODE basicAPPRIS ALT1TSL:1
ENST00000441024.6CNOT1-20249991551aaENSP00000413113.2
 
Protein coding
CCDS45501A5YKK6-4 -GENCODE basicTSL:1
ENST00000568917.1CNOT1-2141317439aaENSP00000454611.1
 
Protein coding
H3BMZ2 -TSL:5CDS 5' and 3' incomplete
ENST00000569882.1CNOT1-219831277aaENSP00000454377.1
 
Protein coding
H3BMH0 -TSL:3CDS 5' and 3' incomplete
ENST00000567285.1CNOT1-212722241aaENSP00000458057.1
 
Protein coding
H3BVC9 -TSL:4CDS 5' and 3' incomplete
ENST00000564557.1CNOT1-20658262aaENSP00000456975.1
 
Protein coding
H3BT18 -TSL:3CDS 3' incomplete
ENST00000562046.1CNOT1-203578193aaENSP00000456131.1
 
Protein coding
H3BR89 -TSL:5CDS 5' and 3' incomplete
ENST00000567133.1CNOT1-210553185aaENSP00000454763.1
 
Protein coding
H3BNB1 -TSL:5CDS 5' and 3' incomplete
ENST00000569020.5CNOT1-21553525aaENSP00000457869.1
 
Protein coding
H3BPF1 -TSL:4CDS 3' incomplete
ENST00000565697.1CNOT1-20838525aaENSP00000455289.1
 
Protein coding
H3BPF1 -TSL:3CDS 3' incomplete
ENST00000567188.5CNOT1-21178302150aaENSP00000456649.1
 
Nonsense mediated decay
A5YKK6-3 -TSL:1
ENST00000565605.5CNOT1-20773996aaENSP00000457460.1
 
Nonsense mediated decay
H3BU44 -TSL:4
ENST00000566240.1CNOT1-20956768aaENSP00000457173.1
 
Nonsense mediated decay
H3BTH2 -TSL:4CDS 5' incomplete
ENST00000569732.1CNOT1-218906No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000568158.1CNOT1-213496No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000569263.1CNOT1-217304No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000563130.5CNOT1-2042280No protein-
 
Retained intron
--TSL:2
ENST00000569916.1CNOT1-220599No protein-
 
Retained intron
--TSL:3
ENST00000563283.1CNOT1-205551No protein-
 
Retained intron
--TSL:3
ENST00000569924.1CNOT1-221493No protein-
 
Retained intron
--TSL:2
ENST00000570139.1CNOT1-222458No protein-
 
Retained intron
--TSL:2
Statistics

Exons: 49, Coding exons: 48, Transcript length: 8,411 bps, Translation length: 2,376 residues

MANE

This MANE Select transcript contains ENSP00000320949 and matches to NM_016284.5 and NP_057368.3

Uniprot

This transcript corresponds to the following Uniprot identifiers: A5YKK6

CCDS

This transcript is a member of the Human CCDS set: CCDS10799

Transcript Support Level (TSL)

TSL:1

Version

ENST00000317147.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.