Human (GRCh38.p14)
Description

structural maintenance of chromosomes 4 [Source:HGNC Symbol;Acc:HGNC:14013]

Gene Synonyms

CAP-C, HCAP-C, SMC4L1

About this transcript

This transcript has 24 exons, is annotated with 36 domains and features, is associated with 17324 variant alleles and maps to 855 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000357388.8SMC4-20251161288aaENSP00000349961.3
 
Protein coding
CCDS3189Q9NTJ3-1 NM_001002800.3MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000344722.5SMC4-20153561288aaENSP00000341382.5
 
Protein coding
CCDS3189Q9NTJ3-1 -GENCODE basicAPPRIS P1TSL:1
ENST00000462787.5SMC4-20450331230aaENSP00000420734.1
 
Protein coding
Q9NTJ3-2 -GENCODE basicTSL:2
ENST00000469762.5SMC4-21039981263aaENSP00000417964.1
 
Protein coding
CCDS75046E9PD53 -GENCODE basicTSL:2
ENST00000489573.5SMC4-2211553423aaENSP00000420121.1
 
Protein coding
C9JR83 -TSL:1CDS 3' incomplete
ENST00000465903.5SMC4-206849170aaENSP00000419247.1
 
Protein coding
C9JWF0 -TSL:3CDS 3' incomplete
ENST00000490207.5SMC4-222821180aaENSP00000420817.1
 
Protein coding
C9JJ64 -TSL:5CDS 3' incomplete
ENST00000497311.5SMC4-226708173aaENSP00000418820.1
 
Protein coding
C9IYK2 -TSL:5CDS 3' incomplete
ENST00000485867.5SMC4-217629157aaENSP00000417612.1
 
Protein coding
C9J9E4 -TSL:3CDS 3' incomplete
ENST00000485645.5SMC4-216583173aaENSP00000420644.1
 
Protein coding
C9IYK2 -TSL:5CDS 3' incomplete
ENST00000472991.5SMC4-214582139aaENSP00000417999.1
 
Protein coding
C9J578 -TSL:5CDS 3' incomplete
ENST00000467468.5SMC4-208566119aaENSP00000419360.1
 
Protein coding
C9JVD8 -TSL:4CDS 3' incomplete
ENST00000469858.5SMC4-211197150aaENSP00000418434.1
 
Nonsense mediated decay
F8WCB7 -TSL:2
ENST00000470240.5SMC4-212724No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000472282.5SMC4-213667No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000487747.5SMC4-219637No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000494612.1SMC4-224622No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000497984.5SMC4-227563No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000462668.5SMC4-2034235No protein-
 
Retained intron
--TSL:2
ENST00000468653.5SMC4-2091756No protein-
 
Retained intron
--TSL:2
ENST00000465563.5SMC4-205747No protein-
 
Retained intron
--TSL:2
ENST00000486711.1SMC4-218621No protein-
 
Retained intron
--TSL:2
ENST00000488017.1SMC4-220592No protein-
 
Retained intron
--TSL:4
ENST00000497203.1SMC4-225490No protein-
 
Retained intron
--TSL:3
ENST00000484799.1SMC4-215478No protein-
 
Retained intron
--TSL:2
ENST00000493695.1SMC4-223457No protein-
 
Retained intron
--TSL:2
ENST00000467263.1SMC4-207401No protein-
 
Retained intron
--TSL:2
Statistics

Exons: 24, Coding exons: 23, Transcript length: 5,116 bps, Translation length: 1,288 residues

MANE

This MANE Select transcript contains ENSP00000349961 and matches to NM_001002800.3 and NP_001002800.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NTJ3

CCDS

This transcript is a member of the Human CCDS set: CCDS3189

Transcript Support Level (TSL)

TSL:1

Version

ENST00000357388.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.