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EnsemblEnsembl Home
Description

small nucleolar RNA host gene 1 [Source:HGNC Symbol;Acc:HGNC:32688]

Gene Synonyms

LINC00057, NCRNA00057, UHG, lncRNA16

Location
Gene
Transcript IDNamebpProteinTranslation IDBiotypeCCDSRefSeq MatchFlags
ENST00000665371.1SNHG1-2453294No protein-
 
Retained intron
---
ENST00000535076.6SNHG1-2012812No protein-
 
Retained intron
--TSL:2
ENST00000537965.6SNHG1-2072772No protein-
 
Retained intron
--TSL:5
ENST00000538654.6SNHG1-2092769No protein-
 
Retained intron
--TSL:2
ENST00000661616.1SNHG1-2372336No protein-
 
Retained intron
---
ENST00000535689.6SNHG1-2022173No protein-
 
Retained intron
--TSL:2
ENST00000541416.6SNHG1-2162078No protein-
 
Retained intron
--TSL:2
ENST00000537024.6SNHG1-2031727No protein-
 
Retained intron
--TSL:5
ENST00000544550.6SNHG1-2201689No protein-
 
Retained intron
--TSL:2
ENST00000540865.5SNHG1-214784No protein-
 
Retained intron
--TSL:5
ENST00000545308.5SNHG1-222646No protein-
 
Retained intron
--TSL:2
ENST00000545688.5SNHG1-224610No protein-
 
Retained intron
--TSL:3
ENST00000540904.1SNHG1-215594No protein-
 
Retained intron
--TSL:5
ENST00000689147.1SNHG1-2661162No protein-
 
lncRNA
--Ensembl Canonical
ENST00000656268.1SNHG1-2313771No protein-
 
lncRNA
---
ENST00000545920.2SNHG1-2253527No protein-
 
lncRNA
--TSL:2
ENST00000660960.1SNHG1-2363500No protein-
 
lncRNA
---
ENST00000655919.1SNHG1-2283489No protein-
 
lncRNA
---
ENST00000668309.1SNHG1-2493302No protein-
 
lncRNA
--GENCODE basic
ENST00000664307.1SNHG1-2443228No protein-
 
lncRNA
---
ENST00000663237.1SNHG1-2423119No protein-
 
lncRNA
---
ENST00000665512.1SNHG1-2463065No protein-
 
lncRNA
---
ENST00000652879.1SNHG1-2262982No protein-
 
lncRNA
---
ENST00000671236.1SNHG1-2542843No protein-
 
lncRNA
---
ENST00000670729.1SNHG1-2532763No protein-
 
lncRNA
---
ENST00000662400.1SNHG1-2402560No protein-
 
lncRNA
---
ENST00000670469.1SNHG1-2512470No protein-
 
lncRNA
---
ENST00000656240.1SNHG1-2292456No protein-
 
lncRNA
---
ENST00000661936.1SNHG1-2382345No protein-
 
lncRNA
---
ENST00000662229.1SNHG1-2392309No protein-
 
lncRNA
---
ENST00000656589.1SNHG1-2322152No protein-
 
lncRNA
---
ENST00000544983.2SNHG1-2211968No protein-
 
lncRNA
--TSL:2
ENST00000660730.1SNHG1-2351944No protein-
 
lncRNA
--GENCODE basic
ENST00000656241.1SNHG1-2301828No protein-
 
lncRNA
---
ENST00000660547.1SNHG1-2341785No protein-
 
lncRNA
---
ENST00000667655.1SNHG1-2471782No protein-
 
lncRNA
---
ENST00000670502.1SNHG1-2521752No protein-
 
lncRNA
--GENCODE basic
ENST00000692454.1SNHG1-2721735No protein-
 
lncRNA
--GENCODE basic
ENST00000691324.1SNHG1-2711551No protein-
 
lncRNA
---
ENST00000658540.1SNHG1-2331513No protein-
 
lncRNA
---
ENST00000537925.5SNHG1-2061487No protein-
 
lncRNA
--TSL:1
ENST00000653690.1SNHG1-2271438No protein-
 
lncRNA
---
ENST00000540725.6SNHG1-2131394No protein-
 
lncRNA
--TSL:1
ENST00000663092.1SNHG1-2411320No protein-
 
lncRNA
---
ENST00000688102.1SNHG1-2651300No protein-
 
lncRNA
---
ENST00000687029.1SNHG1-2631282No protein-
 
lncRNA
---
ENST00000663967.1SNHG1-2431202No protein-
 
lncRNA
---
ENST00000668048.1SNHG1-2481158No protein-
 
lncRNA
---
ENST00000686478.1SNHG1-2591147No protein-
 
lncRNA
---
ENST00000686670.1SNHG1-2611132No protein-
 
lncRNA
---
ENST00000670323.1SNHG1-2501112No protein-
 
lncRNA
---
ENST00000539921.7SNHG1-2111105No protein-
 
lncRNA
--TSL:2
ENST00000685229.1SNHG1-2551100No protein-
 
lncRNA
---
ENST00000692887.1SNHG1-2731092No protein-
 
lncRNA
---
ENST00000685577.1SNHG1-2561089No protein-
 
lncRNA
---
ENST00000686500.1SNHG1-2601073No protein-
 
lncRNA
---
ENST00000691255.1SNHG1-2701073No protein-
 
lncRNA
---
ENST00000537869.6SNHG1-2051069No protein-
 
lncRNA
--TSL:3
ENST00000687243.1SNHG1-2641033No protein-
 
lncRNA
---
ENST00000686081.1SNHG1-2581018No protein-
 
lncRNA
---
ENST00000686740.1SNHG1-2621011No protein-
 
lncRNA
---
ENST00000686008.1SNHG1-257988No protein-
 
lncRNA
---
ENST00000693734.1SNHG1-274974No protein-
 
lncRNA
---
ENST00000690476.1SNHG1-268964No protein-
 
lncRNA
---
ENST00000539975.5SNHG1-212955No protein-
 
lncRNA
--TSL:5
ENST00000690542.1SNHG1-269935No protein-
 
lncRNA
---
ENST00000541578.6SNHG1-217897No protein-
 
lncRNA
--TSL:3
ENST00000539303.6SNHG1-210897No protein-
 
lncRNA
--TSL:3
ENST00000689664.1SNHG1-267843No protein-
 
lncRNA
---
ENST00000542112.5SNHG1-219780No protein-
 
lncRNA
--TSL:3
ENST00000545440.5SNHG1-223754No protein-
 
lncRNA
--TSL:2
ENST00000541615.5SNHG1-218748No protein-
 
lncRNA
--TSL:5
ENST00000537068.5SNHG1-204629No protein-
 
lncRNA
--TSL:5
ENST00000538266.5SNHG1-208347No protein-
 
lncRNA
--TSL:3
Description

ATRX chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886]

Gene Synonyms

JMS, MRX52, RAD54, XH2, XNP

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000373344.11ATRX-201111652492aaENSP00000362441.4
 
Protein coding
CCDS14434A4LAA3 P46100 NM_000489.6MANE Select v0.95Ensembl CanonicalGENCODE basicAPPRIS P4TSL:1
ENST00000395603.7ATRX-202102182454aaENSP00000378967.3
 
Protein coding
CCDS14435P46100 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000675732.1ATRX-2245847858aaENSP00000502598.1
 
Protein coding
-A0A6Q8PHA4 -GENCODE basic
ENST00000624166.3ATRX-21442721351aaENSP00000485103.1
 
Protein coding
-A0A096LNL9 -TSL:1CDS 3' incomplete
ENST00000624032.3ATRX-2133071954aaENSP00000485253.1
 
Protein coding
-A0A096LNW1 -TSL:1CDS 3' incomplete
ENST00000493470.2ATRX-2072967293aaENSP00000485408.1
 
Protein coding
-A0A096LP59 -TSL:1CDS 5' incomplete
ENST00000623321.3ATRX-2111860528aaENSP00000485127.1
 
Protein coding
-A0A096LNN3 -TSL:1CDS 3' incomplete
ENST00000400866.4ATRX-203814198aaENSP00000383663.3
 
Protein coding
-H0Y3T0 -TSL:5CDS 5' incomplete
ENST00000622960.1ATRX-20862847aaENSP00000485587.1
 
Protein coding
-A0A096LPG6 -TSL:5CDS 3' incomplete
ENST00000625063.3ATRX-218593198aaENSP00000485099.1
 
Protein coding
-A0A096LNL6 -TSL:5CDS 5' and 3' incomplete
ENST00000624668.3ATRX-216583108aaENSP00000485100.1
 
Protein coding
-A0A096LNL7 -TSL:5CDS 3' incomplete
ENST00000480283.5ATRX-20610455164aaENSP00000480196.1
 
Nonsense mediated decay
-A0A087WWG0 -TSL:1
ENST00000623316.1ATRX-210803175aaENSP00000485274.1
 
Nonsense mediated decay
-A0A096LNX6 -TSL:5CDS 5' incomplete
ENST00000623242.3ATRX-20972566aaENSP00000485183.1
 
Nonsense mediated decay
-A0A096LNR8 -TSL:3CDS 5' incomplete
ENST00000635865.1ATRX-2191006aaENSP00000490150.1
 
Nonsense mediated decay
---TSL:5CDS 5' incomplete
ENST00000624193.1ATRX-215463No protein-
 
Processed transcript
---TSL:4
ENST00000637175.1ATRX-222100No protein-
 
Processed transcript
---TSL:5
ENST00000636152.1ATRX-220100No protein-
 
Processed transcript
---TSL:5
ENST00000636868.1ATRX-221100No protein-
 
Processed transcript
---TSL:5
ENST00000637959.1ATRX-22386No protein-
 
Processed transcript
---TSL:5
ENST00000623706.3ATRX-2127245No protein-
 
Retained intron
---TSL:2
ENST00000675908.1ATRX-2254653No protein-
 
Retained intron
----
ENST00000624766.1ATRX-217580No protein-
 
Retained intron
---TSL:2
ENST00000460639.2ATRX-204461No protein-
 
Retained intron
---TSL:3
ENST00000479487.1ATRX-205408No protein-
 
Retained intron
---TSL:3
Description

Pvt1 oncogene [Source:HGNC Symbol;Acc:HGNC:9709]

Gene Synonyms

LINC00079, MIR1204HG, NCRNA00079, onco-lncRNA-100

Transcript IDNamebpProteinTranslation IDBiotypeCCDSRefSeq MatchFlags
ENST00000651587.1PVT1-2242444No protein-
 
lncRNA
--Ensembl CanonicalGENCODE basic
ENST00000660438.1PVT1-2932450No protein-
 
lncRNA
--GENCODE basic
ENST00000523068.2PVT1-2162255No protein-
 
lncRNA
--GENCODE basicTSL:5
ENST00000664995.1PVT1-3232230No protein-
 
lncRNA
--GENCODE basic
ENST00000659106.1PVT1-2832187No protein-
 
lncRNA
---
ENST00000660631.1PVT1-2952161No protein-
 
lncRNA
---
ENST00000657449.1PVT1-2652149No protein-
 
lncRNA
--GENCODE basic
ENST00000667418.1PVT1-3472143No protein-
 
lncRNA
--GENCODE basic
ENST00000666147.1PVT1-3362097No protein-
 
lncRNA
---
ENST00000656693.1PVT1-2541990No protein-
 
lncRNA
--GENCODE basic
ENST00000668098.1PVT1-3511985No protein-
 
lncRNA
---
ENST00000665856.1PVT1-3311965No protein-
 
lncRNA
--GENCODE basic
ENST00000656532.1PVT1-2531909No protein-
 
lncRNA
---
ENST00000670532.1PVT1-3681840No protein-
 
lncRNA
--GENCODE basic
ENST00000660456.1PVT1-2941814No protein-
 
lncRNA
---
ENST00000670714.1PVT1-3721756No protein-
 
lncRNA
---
ENST00000659912.1PVT1-2881744No protein-
 
lncRNA
---
ENST00000658840.1PVT1-2821738No protein-
 
lncRNA
--GENCODE basic
ENST00000662413.1PVT1-3081727No protein-
 
lncRNA
---
ENST00000664265.1PVT1-3171720No protein-
 
lncRNA
--GENCODE basic
ENST00000659326.1PVT1-2841706No protein-
 
lncRNA
--GENCODE basic
ENST00000667305.1PVT1-3461701No protein-
 
lncRNA
---
ENST00000513868.6PVT1-2031699No protein-
 
lncRNA
--GENCODE basicTSL:1
ENST00000657356.1PVT1-2631697No protein-
 
lncRNA
--GENCODE basic
ENST00000668619.1PVT1-3571685No protein-
 
lncRNA
---
ENST00000662410.1PVT1-3071668No protein-
 
lncRNA
---
ENST00000667630.1PVT1-3491634No protein-
 
lncRNA
---
ENST00000666776.1PVT1-3401628No protein-
 
lncRNA
--GENCODE basic
ENST00000522963.6PVT1-2151619No protein-
 
lncRNA
--GENCODE basicTSL:4
ENST00000652816.1PVT1-2291610No protein-
 
lncRNA
---
ENST00000670204.1PVT1-3661600No protein-
 
lncRNA
--GENCODE basic
ENST00000656402.1PVT1-2501585No protein-
 
lncRNA
---
ENST00000657289.1PVT1-2611581No protein-
 
lncRNA
---
ENST00000661988.1PVT1-3051580No protein-
 
lncRNA
---
ENST00000521122.2PVT1-2101578No protein-
 
lncRNA
--GENCODE basicTSL:3
ENST00000666777.1PVT1-3411555No protein-
 
lncRNA
---
ENST00000661160.1PVT1-3001546No protein-
 
lncRNA
---
ENST00000521951.1PVT1-2121535No protein-
 
lncRNA
--GENCODE basicTSL:1
ENST00000659666.1PVT1-2861533No protein-
 
lncRNA
--GENCODE basic
ENST00000661625.1PVT1-3031519No protein-
 
lncRNA
--GENCODE basic
ENST00000669416.1PVT1-3621516No protein-
 
lncRNA
---
ENST00000517790.2PVT1-2051513No protein-
 
lncRNA
--TSL:2
ENST00000657112.1PVT1-2581499No protein-
 
lncRNA
---
ENST00000661830.1PVT1-3041490No protein-
 
lncRNA
---
ENST00000653853.1PVT1-2371490No protein-
 
lncRNA
---
ENST00000669951.1PVT1-3641485No protein-
 
lncRNA
---
ENST00000654369.1PVT1-2421482No protein-
 
lncRNA
---
ENST00000666080.1PVT1-3341481No protein-
 
lncRNA
---
ENST00000663461.1PVT1-3121471No protein-
 
lncRNA
---
ENST00000523190.7PVT1-2171466No protein-
 
lncRNA
--TSL:3
ENST00000667149.1PVT1-3441463No protein-
 
lncRNA
---
ENST00000654105.1PVT1-2401460No protein-
 
lncRNA
---
ENST00000657596.1PVT1-2681455No protein-
 
lncRNA
---
ENST00000657451.1PVT1-2661454No protein-
 
lncRNA
---
ENST00000661205.1PVT1-3011449No protein-
 
lncRNA
---
ENST00000668123.1PVT1-3521433No protein-
 
lncRNA
---
ENST00000669272.1PVT1-3601417No protein-
 
lncRNA
---
ENST00000654324.1PVT1-2411411No protein-
 
lncRNA
---
ENST00000665737.1PVT1-3301410No protein-
 
lncRNA
---
ENST00000658350.1PVT1-2791402No protein-
 
lncRNA
---
ENST00000664299.1PVT1-3191396No protein-
 
lncRNA
---
ENST00000671092.1PVT1-3751393No protein-
 
lncRNA
---
ENST00000657667.1PVT1-2691378No protein-
 
lncRNA
---
ENST00000659625.1PVT1-2851363No protein-
 
lncRNA
---
ENST00000657211.1PVT1-2601353No protein-
 
lncRNA
---
ENST00000670795.1PVT1-3731348No protein-
 
lncRNA
---
ENST00000663059.1PVT1-3111330No protein-
 
lncRNA
---
ENST00000653990.1PVT1-2381329No protein-
 
lncRNA
---
ENST00000670223.1PVT1-3671321No protein-
 
lncRNA
---
ENST00000656999.1PVT1-2571314No protein-
 
lncRNA
---
ENST00000666353.1PVT1-3381312No protein-
 
lncRNA
---
ENST00000654091.1PVT1-2391311No protein-
 
lncRNA
---
ENST00000656411.1PVT1-2511281No protein-
 
lncRNA
---
ENST00000669082.1PVT1-3581280No protein-
 
lncRNA
---
ENST00000653497.1PVT1-2331278No protein-
 
lncRNA
---
ENST00000653522.1PVT1-2341275No protein-
 
lncRNA
---
ENST00000667714.1PVT1-3501269No protein-
 
lncRNA
---
ENST00000653845.1PVT1-2361262No protein-
 
lncRNA
---
ENST00000685634.1PVT1-3781256No protein-
 
lncRNA
---
ENST00000657517.1PVT1-2671253No protein-
 
lncRNA
---
ENST00000664293.1PVT1-3181206No protein-
 
lncRNA
---
ENST00000663753.1PVT1-3141206No protein-
 
lncRNA
---
ENST00000664742.1PVT1-3211200No protein-
 
lncRNA
---
ENST00000660122.1PVT1-2901199No protein-
 
lncRNA
---
ENST00000517525.2PVT1-2041194No protein-
 
lncRNA
--TSL:3
ENST00000671088.1PVT1-3741191No protein-
 
lncRNA
---
ENST00000657183.1PVT1-2591172No protein-
 
lncRNA
--GENCODE basic
ENST00000656491.1PVT1-2521167No protein-
 
lncRNA
---
ENST00000658556.1PVT1-2811163No protein-
 
lncRNA
---
ENST00000692433.1PVT1-3821163No protein-
 
lncRNA
---
ENST00000665721.1PVT1-3291162No protein-
 
lncRNA
---
ENST00000669132.1PVT1-3591156No protein-
 
lncRNA
---
ENST00000662766.1PVT1-3101152No protein-
 
lncRNA
---
ENST00000660200.1PVT1-2921139No protein-
 
lncRNA
--GENCODE basic
ENST00000662061.1PVT1-3061139No protein-
 
lncRNA
---
ENST00000522414.2PVT1-2131132No protein-
 
lncRNA
--TSL:2
ENST00000660896.1PVT1-2981128No protein-
 
lncRNA
---
ENST00000652695.1PVT1-2271126No protein-
 
lncRNA
---
ENST00000670602.1PVT1-3701124No protein-
 
lncRNA
---
ENST00000655783.1PVT1-2461118No protein-
 
lncRNA
---
ENST00000524165.6PVT1-2201114No protein-
 
lncRNA
--TSL:2
ENST00000664610.1PVT1-3201114No protein-
 
lncRNA
---
ENST00000670626.1PVT1-3711114No protein-
 
lncRNA
---
ENST00000512617.7PVT1-2021109No protein-
 
lncRNA
--TSL:3
ENST00000656077.1PVT1-2471109No protein-
 
lncRNA
--GENCODE basic
ENST00000665246.1PVT1-3261096No protein-
 
lncRNA
---
ENST00000668479.1PVT1-3551091No protein-
 
lncRNA
---
ENST00000657384.1PVT1-2641068No protein-
 
lncRNA
---
ENST00000669509.1PVT1-3631066No protein-
 
lncRNA
---
ENST00000666076.1PVT1-3331062No protein-
 
lncRNA
---
ENST00000523328.6PVT1-2181047No protein-
 
lncRNA
--TSL:1
ENST00000667539.1PVT1-3481041No protein-
 
lncRNA
---
ENST00000664139.1PVT1-3151036No protein-
 
lncRNA
---
ENST00000650846.1PVT1-2211020No protein-
 
lncRNA
---
ENST00000666842.1PVT1-3421019No protein-
 
lncRNA
---
ENST00000652492.1PVT1-2261017No protein-
 
lncRNA
--GENCODE basic
ENST00000656880.1PVT1-2551017No protein-
 
lncRNA
---
ENST00000504719.7PVT1-2011017No protein-
 
lncRNA
--TSL:2
ENST00000519481.6PVT1-2081010No protein-
 
lncRNA
--TSL:2
ENST00000685606.1PVT1-3771004No protein-
 
lncRNA
---
ENST00000666452.1PVT1-3391001No protein-
 
lncRNA
---
ENST00000665698.1PVT1-3281000No protein-
 
lncRNA
---
ENST00000518528.2PVT1-207995No protein-
 
lncRNA
--TSL:3
ENST00000655594.1PVT1-245978No protein-
 
lncRNA
---
ENST00000657693.1PVT1-271977No protein-
 
lncRNA
---
ENST00000651568.1PVT1-223971No protein-
 
lncRNA
--GENCODE basic
ENST00000665166.1PVT1-324965No protein-
 
lncRNA
---
ENST00000665175.1PVT1-325964No protein-
 
lncRNA
---
ENST00000666223.1PVT1-337963No protein-
 
lncRNA
---
ENST00000668480.1PVT1-356956No protein-
 
lncRNA
---
ENST00000656396.1PVT1-249938No protein-
 
lncRNA
---
ENST00000656168.1PVT1-248935No protein-
 
lncRNA
--GENCODE basic
ENST00000661391.1PVT1-302924No protein-
 
lncRNA
---
ENST00000522875.5PVT1-214922No protein-
 
lncRNA
--TSL:5
ENST00000690350.1PVT1-380922No protein-
 
lncRNA
---
ENST00000651664.1PVT1-225914No protein-
 
lncRNA
---
ENST00000658158.1PVT1-276909No protein-
 
lncRNA
--GENCODE basic
ENST00000657297.1PVT1-262907No protein-
 
lncRNA
---
ENST00000653608.1PVT1-235906No protein-
 
lncRNA
---
ENST00000656948.1PVT1-256904No protein-
 
lncRNA
---
ENST00000667204.1PVT1-345897No protein-
 
lncRNA
---
ENST00000690788.1PVT1-381891No protein-
 
lncRNA
---
ENST00000669407.1PVT1-361890No protein-
 
lncRNA
---
ENST00000664924.1PVT1-322886No protein-
 
lncRNA
---
ENST00000670535.1PVT1-369876No protein-
 
lncRNA
---
ENST00000660069.1PVT1-289870No protein-
 
lncRNA
---
ENST00000652993.1PVT1-231866No protein-
 
lncRNA
---
ENST00000664214.1PVT1-316861No protein-
 
lncRNA
---
ENST00000662709.1PVT1-309858No protein-
 
lncRNA
---
ENST00000655099.1PVT1-243855No protein-
 
lncRNA
---
ENST00000660781.1PVT1-297854No protein-
 
lncRNA
---
ENST00000692980.1PVT1-383851No protein-
 
lncRNA
---
ENST00000523427.2PVT1-219837No protein-
 
lncRNA
--TSL:3
ENST00000520913.2PVT1-209835No protein-
 
lncRNA
--TSL:2
ENST00000666878.1PVT1-343830No protein-
 
lncRNA
---
ENST00000652883.1PVT1-230821No protein-
 
lncRNA
---
ENST00000517838.6PVT1-206821No protein-
 
lncRNA
--TSL:2
ENST00000658018.1PVT1-274820No protein-
 
lncRNA
---
ENST00000652728.1PVT1-228812No protein-
 
lncRNA
---
ENST00000671587.1PVT1-376803No protein-
 
lncRNA
---
ENST00000659892.1PVT1-287782No protein-
 
lncRNA
---
ENST00000650930.1PVT1-222777No protein-
 
lncRNA
---
ENST00000660146.1PVT1-291764No protein-
 
lncRNA
---
ENST00000665372.1PVT1-327762No protein-
 
lncRNA
---
ENST00000658429.1PVT1-280760No protein-
 
lncRNA
---
ENST00000668351.1PVT1-354759No protein-
 
lncRNA
---
ENST00000660912.1PVT1-299754No protein-
 
lncRNA
---
ENST00000658065.1PVT1-275745No protein-
 
lncRNA
---
ENST00000655148.1PVT1-244724No protein-
 
lncRNA
---
ENST00000657945.1PVT1-273678No protein-
 
lncRNA
---
ENST00000660659.1PVT1-296673No protein-
 
lncRNA
---
ENST00000658305.1PVT1-278641No protein-
 
lncRNA
---
ENST00000653406.1PVT1-232619No protein-
 
lncRNA
---
ENST00000663715.1PVT1-313615No protein-
 
lncRNA
---
ENST00000657682.1PVT1-270611No protein-
 
lncRNA
---
ENST00000657844.1PVT1-272609No protein-
 
lncRNA
---
ENST00000666105.1PVT1-335608No protein-
 
lncRNA
---
ENST00000668215.1PVT1-353590No protein-
 
lncRNA
---
ENST00000689722.1PVT1-379573No protein-
 
lncRNA
---
ENST00000666039.1PVT1-332520No protein-
 
lncRNA
---
ENST00000670009.1PVT1-365456No protein-
 
lncRNA
---
ENST00000658242.1PVT1-277432No protein-
 
lncRNA
---
ENST00000521600.5PVT1-211408No protein-
 
lncRNA
--TSL:2
Description

tripartite motif containing 8 [Source:HGNC Symbol;Acc:HGNC:15579]

Gene Synonyms

GERP, RNF27

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000643721.2TRIM8-2092759551aaENSP00000496301.1
 
Protein coding
CCDS31274Q9BZR9 NM_030912.3MANE Select v0.95Ensembl CanonicalGENCODE basicAPPRIS P1
ENST00000302424.12TRIM8-2013048393aaENSP00000302120.6
 
Protein coding
-A0A2U3TZI0 -GENCODE basicTSL:1
ENST00000645961.1TRIM8-213900300aaENSP00000494181.1
 
Protein coding
-A0A2R8Y500 -CDS 5' and 3' incomplete
ENST00000462202.3TRIM8-202883295aaENSP00000473428.2
 
Protein coding
-R4GN03 -TSL:5CDS 5' and 3' incomplete
ENST00000643100.1TRIM8-207836194aaENSP00000494130.1
 
Protein coding
-A0A2R8YD00 -CDS 5' incomplete
ENST00000644914.1TRIM8-21151485aaENSP00000494335.1
 
Protein coding
-A0A2R8Y580 -CDS 5' incomplete
ENST00000642304.1TRIM8-205411116aaENSP00000493545.1
 
Protein coding
-A0A2R8YCF6 -CDS 5' incomplete
ENST00000643376.1TRIM8-2082130202aaENSP00000494508.1
 
Nonsense mediated decay
-A0A2R8Y5K0 -CDS 5' incomplete
ENST00000642664.1TRIM8-2062013257aaENSP00000496615.1
 
Nonsense mediated decay
-A0A2R8YFP1 -CDS 5' incomplete
ENST00000479004.2TRIM8-203776No protein-
 
Processed transcript
---TSL:2
ENST00000487927.6TRIM8-204768No protein-
 
Processed transcript
---TSL:3
ENST00000646349.1TRIM8-214685No protein-
 
Processed transcript
----
ENST00000644572.1TRIM8-2103050No protein-
 
Retained intron
----
ENST00000646757.1TRIM8-2152386No protein-
 
Retained intron
----
ENST00000644979.1TRIM8-2122314No protein-
 
Retained intron
----
Description

upstream transcription factor 2, c-fos interacting [Source:HGNC Symbol;Acc:HGNC:12594]

Gene Synonyms

FIP, bHLHb12

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000222305.8USF2-2011746346aaENSP00000222305.2
 
Protein coding
CCDS12452Q15853-1 NM_003367.4MANE Select v0.95Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000343550.9USF2-2021523279aaENSP00000340633.4
 
Protein coding
CCDS12453Q15853-3 -GENCODE basicTSL:1
ENST00000379134.7USF2-203648215aaENSP00000368429.3
 
Protein coding
CCDS82329Q15853-4 -GENCODE basicTSL:1
ENST00000595068.5USF2-2071612338aaENSP00000471099.1
 
Protein coding
-Q15853-2 -GENCODE basicTSL:5
ENST00000594064.5USF2-2051179349aaENSP00000471511.1
 
Protein coding
-B4DLJ1 -GENCODE basicTSL:2
ENST00000599471.5USF2-2111173253aaENSP00000469364.2
 
Protein coding
-M0QXT0 -TSL:3CDS 5' incomplete
ENST00000596380.5USF2-208550143aaENSP00000471775.1
 
Protein coding
-M0R1C6 -TSL:3CDS 3' incomplete
ENST00000598058.1USF2-210510170aaENSP00000469585.1
 
Protein coding
-M0QY46 -TSL:2CDS 5' and 3' incomplete
ENST00000599625.1USF2-212446149aaENSP00000470081.1
 
Protein coding
-M0QYU7 -TSL:2CDS 5' and 3' incomplete
ENST00000602164.5USF2-215582112aaENSP00000477020.1
 
Nonsense mediated decay
-V9GYR5 -TSL:3
ENST00000597671.5USF2-20946486aaENSP00000470277.1
 
Nonsense mediated decay
-M0QZ39 -TSL:5CDS 5' incomplete
ENST00000600341.5USF2-2131392No protein-
 
Processed transcript
---TSL:2
ENST00000594264.1USF2-2062742No protein-
 
Retained intron
---TSL:2
ENST00000607959.5USF2-2161920No protein-
 
Retained intron
---TSL:5
ENST00000600898.1USF2-214848No protein-
 
Retained intron
---TSL:2
ENST00000593708.1USF2-204474No protein-
 
Retained intron
---TSL:3
Statistics

Exons: 4, Coding exons: 4, Transcript length: 550 bps, Translation length: 143 residues

Transcript Support Level (TSL)

TSL:3

Incomplete CDS

CDS 3' incomplete

Version

ENST00000596380.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript-based displays

    HASH(0x28b706b8)