Human (GRCh38.p14)
Description

SPG11 vesicle trafficking associated, spatacsin [Source:HGNC Symbol;Acc:HGNC:11226]

Gene Synonyms

ALS5, FLJ21439, KIAA1840

Location
About this transcript

This transcript has 30 exons, is associated with 37039 variant alleles and maps to 677 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000261866.12SPG11-20177722443aaENSP00000261866.7
 
Protein coding
CCDS10112Q96JI7-1 NM_025137.4MANE SelectEnsembl CanonicalGENCODE basicTSL:1
ENST00000682065.1SPG11-22176242395aaENSP00000507025.1
 
Protein coding
CCDS91991A0A804HID9 -GENCODE basic
ENST00000684235.1SPG11-23975742392aaENSP00000508295.1
 
Protein coding
A0A804HLC5 -GENCODE basic
ENST00000682669.1SPG11-22675672376aaENSP00000507782.1
 
Protein coding
A0A804HK59 -GENCODE basic
ENST00000535302.6SPG11-20372882330aaENSP00000445278.2
 
Protein coding
CCDS53939Q96JI7-3 -GENCODE basicTSL:1
ENST00000559511.6SPG11-21672792284aaENSP00000453246.2
 
Protein coding
H0YLK7 -GENCODE basicAPPRIS P1TSL:2
ENST00000427534.6SPG11-20269352265aaENSP00000396110.2
 
Protein coding
C4B7M2 -GENCODE basicTSL:1
ENST00000558319.5SPG11-20964262079aaENSP00000453599.1
 
Protein coding
Q96JI7-2 -GENCODE basicTSL:5
ENST00000559193.5SPG11-2142579779aaENSP00000453848.1
 
Protein coding
H0YN34 -GENCODE basicTSL:1
ENST00000558138.2SPG11-2071023340aaENSP00000453314.2
 
Protein coding
H0YLR8 -TSL:5CDS 5' incomplete
ENST00000557866.1SPG11-204468156aaENSP00000453227.1
 
Non stop decay
A0A075B718 -TSL:2CDS 5' incomplete
ENST00000682495.1SPG11-22478931210aaENSP00000507166.1
 
Nonsense mediated decay
A0A804HIP5 --
ENST00000682460.1SPG11-22376911221aaENSP00000508334.1
 
Nonsense mediated decay
A0A804HLF9 --
ENST00000683734.1SPG11-23576121969aaENSP00000508319.1
 
Nonsense mediated decay
A0A804HLE6 --
ENST00000684038.1SPG11-23875861135aaENSP00000507141.1
 
Nonsense mediated decay
A0A804HIM5 --
ENST00000683186.1SPG11-23175781020aaENSP00000507268.1
 
Nonsense mediated decay
A0A804HLG4 --
ENST00000683496.1SPG11-23374252004aaENSP00000506968.1
 
Nonsense mediated decay
A0A804HI99 --
ENST00000684676.1SPG11-24161951873aaENSP00000506948.1
 
Nonsense mediated decay
A0A804HI84 --
ENST00000682788.1SPG11-22750821639aaENSP00000508089.1
 
Nonsense mediated decay
A0A804HKV6 --
ENST00000683121.1SPG11-23047721492aaENSP00000507557.1
 
Nonsense mediated decay
A0A804HJL9 --
ENST00000682915.1SPG11-22939851197aaENSP00000507493.1
 
Nonsense mediated decay
A0A804HJG2 --
ENST00000683255.1SPG11-23234341020aaENSP00000508340.1
 
Nonsense mediated decay
A0A804HLG4 --
ENST00000683573.1SPG11-2343146949aaENSP00000508031.1
 
Nonsense mediated decay
A0A804HKQ8 --
ENST00000682648.1SPG11-2251762No protein-
 
Protein coding CDS not defined
---
ENST00000558253.5SPG11-208879No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000558790.5SPG11-211858No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000559347.1SPG11-215716No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000683753.1SPG11-2366783No protein-
 
Retained intron
---
ENST00000682410.1SPG11-2223129No protein-
 
Retained intron
---
ENST00000682877.1SPG11-2283080No protein-
 
Retained intron
---
ENST00000684490.1SPG11-2402881No protein-
 
Retained intron
---
ENST00000561391.2SPG11-2202861No protein-
 
Retained intron
--TSL:3
ENST00000683838.1SPG11-2371955No protein-
 
Retained intron
---
ENST00000558989.1SPG11-2131816No protein-
 
Retained intron
--TSL:3
ENST00000558080.1SPG11-205759No protein-
 
Retained intron
--TSL:1
ENST00000558988.5SPG11-212620No protein-
 
Retained intron
--TSL:3
ENST00000558561.1SPG11-210555No protein-
 
Retained intron
--TSL:3
ENST00000561268.5SPG11-219530No protein-
 
Retained intron
--TSL:4
ENST00000558093.1SPG11-206526No protein-
 
Retained intron
--TSL:3
ENST00000559933.1SPG11-217518No protein-
 
Retained intron
--TSL:2
ENST00000560299.1SPG11-218437No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 30, Coding exons: 29, Transcript length: 5,082 bps, Translation length: 1,639 residues

Version

ENST00000682788.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

inferred transcript model [Definitions]