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EnsemblEnsembl Home
Description

SOX2 overlapping transcript [Source:HGNC Symbol;Acc:HGNC:20209]

Gene Synonyms

DKFZp761J1324, NCRNA00043, SOX2OT

Transcript IDNamebpProteinTranslation IDBiotypeCCDSRefSeq MatchFlags
ENST00000626948.3SOX2-OT-2401584No protein-
 
lncRNA
--Ensembl CanonicalGENCODE basicTSL:5
ENST00000656613.1SOX2-OT-2924289No protein-
 
lncRNA
--GENCODE basic
ENST00000670501.1SOX2-OT-3024282No protein-
 
lncRNA
---
ENST00000665187.1SOX2-OT-2984263No protein-
 
lncRNA
--GENCODE basic
ENST00000671456.1SOX2-OT-3034240No protein-
 
lncRNA
---
ENST00000657986.1SOX2-OT-2934162No protein-
 
lncRNA
---
ENST00000646698.1SOX2-OT-2824109No protein-
 
lncRNA
---
ENST00000660576.1SOX2-OT-2944101No protein-
 
lncRNA
---
ENST00000600801.7SOX2-OT-2344085No protein-
 
lncRNA
--TSL:5
ENST00000661842.1SOX2-OT-2954077No protein-
 
lncRNA
---
ENST00000654649.1SOX2-OT-2914032No protein-
 
lncRNA
---
ENST00000596250.7SOX2-OT-2253985No protein-
 
lncRNA
--GENCODE basicTSL:5
ENST00000498731.6SOX2-OT-2183964No protein-
 
lncRNA
--TSL:1
ENST00000645583.2SOX2-OT-2753870No protein-
 
lncRNA
---
ENST00000646841.2SOX2-OT-2843868No protein-
 
lncRNA
---
ENST00000654538.1SOX2-OT-2903844No protein-
 
lncRNA
--GENCODE basic
ENST00000665033.1SOX2-OT-2963529No protein-
 
lncRNA
---
ENST00000665112.1SOX2-OT-2973462No protein-
 
lncRNA
---
ENST00000647055.1SOX2-OT-2873274No protein-
 
lncRNA
--GENCODE basic
ENST00000476964.6SOX2-OT-2073226No protein-
 
lncRNA
--GENCODE basicTSL:1
ENST00000647034.2SOX2-OT-2863006No protein-
 
lncRNA
--GENCODE basic
ENST00000493116.6SOX2-OT-2142779No protein-
 
lncRNA
--TSL:4
ENST00000643236.2SOX2-OT-2672454No protein-
 
lncRNA
--GENCODE basic
ENST00000665485.1SOX2-OT-2992297No protein-
 
lncRNA
--GENCODE basic
ENST00000642685.1SOX2-OT-2632276No protein-
 
lncRNA
--GENCODE basic
ENST00000642301.2SOX2-OT-2602271No protein-
 
lncRNA
--GENCODE basic
ENST00000492337.6SOX2-OT-2132184No protein-
 
lncRNA
--TSL:2
ENST00000667332.1SOX2-OT-3002112No protein-
 
lncRNA
---
ENST00000646296.2SOX2-OT-2792094No protein-
 
lncRNA
---
ENST00000642652.2SOX2-OT-2622042No protein-
 
lncRNA
--GENCODE basic
ENST00000646949.2SOX2-OT-2851980No protein-
 
lncRNA
--GENCODE basic
ENST00000643769.1SOX2-OT-2691967No protein-
 
lncRNA
--GENCODE basic
ENST00000644582.1SOX2-OT-2721884No protein-
 
lncRNA
--GENCODE basic
ENST00000466034.7SOX2-OT-2031772No protein-
 
lncRNA
--TSL:1
ENST00000646683.1SOX2-OT-2811766No protein-
 
lncRNA
--GENCODE basic
ENST00000644358.1SOX2-OT-2711703No protein-
 
lncRNA
--GENCODE basic
ENST00000628810.2SOX2-OT-2481675No protein-
 
lncRNA
--GENCODE basicTSL:5
ENST00000643667.1SOX2-OT-2681622No protein-
 
lncRNA
---
ENST00000645423.2SOX2-OT-2741583No protein-
 
lncRNA
---
ENST00000642218.1SOX2-OT-2591500No protein-
 
lncRNA
--GENCODE basic
ENST00000642922.1SOX2-OT-2651468No protein-
 
lncRNA
--GENCODE basic
ENST00000642823.1SOX2-OT-2641444No protein-
 
lncRNA
--GENCODE basic
ENST00000626299.4SOX2-OT-2371412No protein-
 
lncRNA
--GENCODE basicTSL:5
ENST00000646508.1SOX2-OT-2801390No protein-
 
lncRNA
--GENCODE basic
ENST00000597347.5SOX2-OT-2261342No protein-
 
lncRNA
--GENCODE basicTSL:5
ENST00000690586.1SOX2-OT-3131327No protein-
 
lncRNA
--GENCODE basic
ENST00000642429.1SOX2-OT-2611279No protein-
 
lncRNA
---
ENST00000644732.1SOX2-OT-2731242No protein-
 
lncRNA
---
ENST00000691318.1SOX2-OT-3141240No protein-
 
lncRNA
---
ENST00000493521.5SOX2-OT-2151239No protein-
 
lncRNA
--TSL:3
ENST00000647552.1SOX2-OT-2891238No protein-
 
lncRNA
---
ENST00000645960.1SOX2-OT-2761199No protein-
 
lncRNA
---
ENST00000485035.3SOX2-OT-2091162No protein-
 
lncRNA
--TSL:4
ENST00000644304.1SOX2-OT-2701115No protein-
 
lncRNA
---
ENST00000643131.2SOX2-OT-2661097No protein-
 
lncRNA
---
ENST00000647179.1SOX2-OT-2881068No protein-
 
lncRNA
---
ENST00000693669.1SOX2-OT-3151055No protein-
 
lncRNA
---
ENST00000491282.6SOX2-OT-2121040No protein-
 
lncRNA
--TSL:1
ENST00000627501.4SOX2-OT-2411036No protein-
 
lncRNA
--TSL:5
ENST00000630482.2SOX2-OT-2551012No protein-
 
lncRNA
--TSL:5
ENST00000646712.1SOX2-OT-283989No protein-
 
lncRNA
---
ENST00000476125.5SOX2-OT-206979No protein-
 
lncRNA
--TSL:3
ENST00000631025.2SOX2-OT-258954No protein-
 
lncRNA
--TSL:5
ENST00000630553.1SOX2-OT-256905No protein-
 
lncRNA
--GENCODE basicTSL:5
ENST00000477928.1SOX2-OT-208902No protein-
 
lncRNA
--TSL:2
ENST00000627530.3SOX2-OT-242873No protein-
 
lncRNA
--TSL:5
ENST00000597828.5SOX2-OT-228864No protein-
 
lncRNA
--TSL:5
ENST00000685767.1SOX2-OT-306859No protein-
 
lncRNA
---
ENST00000595084.3SOX2-OT-222850No protein-
 
lncRNA
--TSL:5
ENST00000628211.2SOX2-OT-244847No protein-
 
lncRNA
--TSL:5
ENST00000599082.2SOX2-OT-231836No protein-
 
lncRNA
--TSL:5
ENST00000685509.1SOX2-OT-305831No protein-
 
lncRNA
---
ENST00000629781.4SOX2-OT-252818No protein-
 
lncRNA
--TSL:5
ENST00000628496.3SOX2-OT-247798No protein-
 
lncRNA
--TSL:5
ENST00000646056.1SOX2-OT-278796No protein-
 
lncRNA
---
ENST00000686782.1SOX2-OT-308794No protein-
 
lncRNA
---
ENST00000688647.1SOX2-OT-310792No protein-
 
lncRNA
---
ENST00000600386.6SOX2-OT-232789No protein-
 
lncRNA
--TSL:5
ENST00000629112.4SOX2-OT-249782No protein-
 
lncRNA
--TSL:5
ENST00000600778.3SOX2-OT-233762No protein-
 
lncRNA
--TSL:5
ENST00000593549.6SOX2-OT-220753No protein-
 
lncRNA
--TSL:5
ENST00000487240.3SOX2-OT-210751No protein-
 
lncRNA
--TSL:5
ENST00000630887.3SOX2-OT-257745No protein-
 
lncRNA
--TSL:5
ENST00000628343.3SOX2-OT-245743No protein-
 
lncRNA
--TSL:5
ENST00000626802.2SOX2-OT-239737No protein-
 
lncRNA
--TSL:5
ENST00000595313.5SOX2-OT-224716No protein-
 
lncRNA
--TSL:5
ENST00000689495.1SOX2-OT-311705No protein-
 
lncRNA
---
ENST00000685088.1SOX2-OT-304694No protein-
 
lncRNA
---
ENST00000627738.1SOX2-OT-243692No protein-
 
lncRNA
--TSL:5
ENST00000686214.1SOX2-OT-307679No protein-
 
lncRNA
---
ENST00000629830.3SOX2-OT-253677No protein-
 
lncRNA
--TSL:5
ENST00000594942.5SOX2-OT-221675No protein-
 
lncRNA
--TSL:5
ENST00000668295.2SOX2-OT-301671No protein-
 
lncRNA
---
ENST00000626619.2SOX2-OT-238660No protein-
 
lncRNA
--GENCODE basicTSL:5
ENST00000630150.2SOX2-OT-254649No protein-
 
lncRNA
--TSL:5
ENST00000597651.6SOX2-OT-227626No protein-
 
lncRNA
--TSL:5
ENST00000693697.1SOX2-OT-316610No protein-
 
lncRNA
---
ENST00000460739.5SOX2-OT-201609No protein-
 
lncRNA
--TSL:4
ENST00000689942.1SOX2-OT-312585No protein-
 
lncRNA
---
ENST00000595287.1SOX2-OT-223581No protein-
 
lncRNA
--TSL:5
ENST00000497122.5SOX2-OT-216578No protein-
 
lncRNA
--TSL:4
ENST00000629273.2SOX2-OT-250575No protein-
 
lncRNA
--TSL:5
ENST00000629552.2SOX2-OT-251572No protein-
 
lncRNA
--TSL:5
ENST00000687464.1SOX2-OT-309569No protein-
 
lncRNA
---
ENST00000461063.6SOX2-OT-202566No protein-
 
lncRNA
--TSL:3
ENST00000469278.5SOX2-OT-204561No protein-
 
lncRNA
--TSL:4
ENST00000498226.5SOX2-OT-217560No protein-
 
lncRNA
--TSL:4
ENST00000598474.4SOX2-OT-229512No protein-
 
lncRNA
--TSL:5
ENST00000625581.2SOX2-OT-236495No protein-
 
lncRNA
--TSL:5
ENST00000600962.6SOX2-OT-235469No protein-
 
lncRNA
--TSL:5
ENST00000593330.1SOX2-OT-219468No protein-
 
lncRNA
--TSL:3
ENST00000472856.1SOX2-OT-205454No protein-
 
lncRNA
--TSL:2
ENST00000628347.1SOX2-OT-246445No protein-
 
lncRNA
--TSL:5
ENST00000645983.1SOX2-OT-277392No protein-
 
lncRNA
---
ENST00000490005.2SOX2-OT-211383No protein-
 
lncRNA
--TSL:2
ENST00000598867.1SOX2-OT-230348No protein-
 
lncRNA
--TSL:5
Description

TSC complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:12363]

Gene Synonyms

LAM, PPP1R160, TSC4, tuberin

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000219476.9TSC2-20164151807aaENSP00000219476.3
 
Protein coding
CCDS10458P49815-1 NM_000548.5MANE Select v0.95Ensembl CanonicalGENCODE basicTSL:5
ENST00000350773.9TSC2-20255381784aaENSP00000344383.4
 
Protein coding
CCDS45384P49815-4 -GENCODE basicAPPRIS P3TSL:1
ENST00000644043.1TSC2-24454571764aaENSP00000496262.1
 
Protein coding
CCDS10459P49815-2 -GENCODE basic
ENST00000401874.7TSC2-20454371740aaENSP00000384468.2
 
Protein coding
CCDS58408P49815-5 -GENCODE basicAPPRIS ALT1TSL:1
ENST00000568454.6TSC2-22254291751aaENSP00000454487.1
 
Protein coding
CCDS81932H3BMQ0 -GENCODE basicTSL:2
ENST00000439673.6TSC2-20752871704aaENSP00000399232.2
 
Protein coding
CCDS81933P49815-6 -GENCODE basicTSL:2
ENST00000382538.10TSC2-20352641692aaENSP00000371978.6
 
Protein coding
CCDS81934P49815-7 -GENCODE basicTSL:2
ENST00000643946.1TSC2-24363441782aaENSP00000495927.1
 
Protein coding
-A0A2R8Y7C8 -GENCODE basicAPPRIS ALT1
ENST00000643088.1TSC2-23559701738aaENSP00000494747.1
 
Protein coding
-A0A2R8Y5F1 -GENCODE basicAPPRIS ALT1
ENST00000646388.1TSC2-26056141805aaENSP00000495921.1
 
Protein coding
-A0A2R8YGD6 -GENCODE basicAPPRIS ALT1
ENST00000642936.1TSC2-23455071763aaENSP00000494514.1
 
Protein coding
-P49815-3 -GENCODE basic
ENST00000644329.1TSC2-24854531769aaENSP00000496611.1
 
Protein coding
-A0A2R8Y7X5 -GENCODE basic
ENST00000644399.1TSC2-25054451781aaENSP00000493990.1
 
Protein coding
-A0A2R8YDR3 -CDS 5' incomplete
ENST00000644335.1TSC2-24954331739aaENSP00000496317.1
 
Protein coding
-A0A2R8YGU4 -GENCODE basicAPPRIS ALT1
ENST00000642561.1TSC2-22953961760aaENSP00000495099.1
 
Protein coding
-A0A2R8YDZ2 -GENCODE basic
ENST00000642797.1TSC2-23253881741aaENSP00000493846.1
 
Protein coding
-X5D2U8 -GENCODE basicAPPRIS ALT1
ENST00000642365.1TSC2-22841221359aaENSP00000495459.1
 
Protein coding
-A0A2R8Y6C9 -CDS 5' incomplete
ENST00000645186.1TSC2-256541180aaENSP00000495110.1
 
Protein coding
-A0A2R8Y670 -CDS 5' and 3' incomplete
ENST00000432909.3TSC2-205408136aaENSP00000387937.3
 
Protein coding
-C9JX95 -TSL:3CDS 5' and 3' incomplete
ENST00000642206.1TSC2-22733588aaENSP00000495146.1
 
Protein coding
-A0A2R8Y692 -CDS 3' incomplete
ENST00000439117.6TSC2-2065073108aaENSP00000406980.2
 
Nonsense mediated decay
-Q5HYF7 -TSL:1
ENST00000643298.1TSC2-2392963237aaENSP00000494393.1
 
Nonsense mediated decay
-A0A2R8Y5B2 --
ENST00000643745.1TSC2-2422588384aaENSP00000495948.1
 
Nonsense mediated decay
-A0A2R8YGE6 --
ENST00000644135.1TSC2-2452277572aaENSP00000495644.1
 
Nonsense mediated decay
-A0A2R8YEJ8 --
ENST00000569110.2TSC2-2251727316aaENSP00000455817.2
 
Nonsense mediated decay
-H3BQK4 -TSL:5CDS 5' incomplete
ENST00000471143.6TSC2-21257932aaENSP00000458541.2
 
Nonsense mediated decay
-I3L134 -TSL:4CDS 5' incomplete
ENST00000483020.5TSC2-21356335aaENSP00000460310.1
 
Nonsense mediated decay
-I3L3B1 -TSL:4CDS 5' incomplete
ENST00000568566.5TSC2-22354230aaENSP00000455997.1
 
Nonsense mediated decay
-H3BQY7 -TSL:3CDS 5' incomplete
ENST00000646464.1TSC2-26146165aaENSP00000496610.1
 
Nonsense mediated decay
-A0A2R8YHA2 -CDS 5' incomplete
ENST00000644417.1TSC2-25143686aaENSP00000493912.1
 
Nonsense mediated decay
-A0A2R8YCR8 -CDS 5' incomplete
ENST00000646634.1TSC2-2634321No protein-
 
Processed transcript
----
ENST00000642728.1TSC2-2301171No protein-
 
Processed transcript
----
ENST00000467949.2TSC2-211606No protein-
 
Processed transcript
---TSL:4
ENST00000562474.1TSC2-218589No protein-
 
Processed transcript
---TSL:5
ENST00000647234.1TSC2-2684228No protein-
 
Retained intron
----
ENST00000643149.1TSC2-2374117No protein-
 
Retained intron
----
ENST00000644665.1TSC2-2523604No protein-
 
Retained intron
----
ENST00000645591.1TSC2-2593488No protein-
 
Retained intron
----
ENST00000645024.1TSC2-2553475No protein-
 
Retained intron
----
ENST00000569930.2TSC2-2263388No protein-
 
Retained intron
---TSL:2
ENST00000497886.5TSC2-2163248No protein-
 
Retained intron
---TSL:2
ENST00000643426.1TSC2-2403123No protein-
 
Retained intron
----
ENST00000461648.3TSC2-2082793No protein-
 
Retained intron
---TSL:2
ENST00000647242.1TSC2-2692749No protein-
 
Retained intron
----
ENST00000647042.1TSC2-2662729No protein-
 
Retained intron
----
ENST00000646674.1TSC2-2642710No protein-
 
Retained intron
----
ENST00000647180.1TSC2-2672617No protein-
 
Retained intron
----
ENST00000463601.2TSC2-2092529No protein-
 
Retained intron
---TSL:3
ENST00000644222.1TSC2-2462433No protein-
 
Retained intron
----
ENST00000642812.1TSC2-2332320No protein-
 
Retained intron
----
ENST00000642791.1TSC2-2311855No protein-
 
Retained intron
----
ENST00000644847.1TSC2-2541735No protein-
 
Retained intron
----
ENST00000645552.1TSC2-2581706No protein-
 
Retained intron
----
ENST00000568692.2TSC2-2241695No protein-
 
Retained intron
---TSL:3
ENST00000646823.1TSC2-2651536No protein-
 
Retained intron
----
ENST00000643177.1TSC2-2381181No protein-
 
Retained intron
----
ENST00000644722.1TSC2-253992No protein-
 
Retained intron
----
ENST00000463808.1TSC2-210842No protein-
 
Retained intron
---TSL:2
ENST00000643120.1TSC2-236792No protein-
 
Retained intron
----
ENST00000563346.2TSC2-219703No protein-
 
Retained intron
---TSL:2
ENST00000644278.1TSC2-247649No protein-
 
Retained intron
----
ENST00000488675.5TSC2-214567No protein-
 
Retained intron
---TSL:2
ENST00000568366.6TSC2-221562No protein-
 
Retained intron
---TSL:4
ENST00000561695.1TSC2-217555No protein-
 
Retained intron
---TSL:2
ENST00000643533.1TSC2-241516No protein-
 
Retained intron
----
ENST00000490108.1TSC2-215482No protein-
 
Retained intron
---TSL:4
ENST00000646557.1TSC2-262478No protein-
 
Retained intron
----
ENST00000568238.1TSC2-220422No protein-
 
Retained intron
---TSL:3
ENST00000645192.1TSC2-257209No protein-
 
Retained intron
----
Statistics

Exons: 38, Coding exons: 4, Transcript length: 5,073 bps, Translation length: 108 residues

Transcript Support Level (TSL)

TSL:1

Version

ENST00000439117.6

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript-based displays

    HASH(0x276ebf48)