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EnsemblEnsembl Home
Description

rhabdomyosarcoma 2 associated transcript [Source:HGNC Symbol;Acc:HGNC:29893]

Gene Synonyms

LINC00054, NCRMS, NCRNA00054

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSRefSeq MatchFlags
ENST00000663411.1RMST-2222264No protein-
 
Retained intron
---
ENST00000547996.2RMST-2041621No protein-
 
Retained intron
--TSL:3
ENST00000547946.1RMST-203687No protein-
 
Retained intron
--TSL:NA
ENST00000640149.1RMST-2092844No protein-
 
lncRNA
--Ensembl CanonicalGENCODE basicTSL:5
ENST00000658877.1RMST-2163444No protein-
 
lncRNA
--GENCODE basic
ENST00000639542.1RMST-2083269No protein-
 
lncRNA
--TSL:5
ENST00000690227.1RMST-2372945No protein-
 
lncRNA
--GENCODE basic
ENST00000687565.1RMST-2342690No protein-
 
lncRNA
---
ENST00000660138.1RMST-2172632No protein-
 
lncRNA
---
ENST00000538559.6RMST-2012598No protein-
 
lncRNA
--GENCODE basicTSL:5
ENST00000687746.1RMST-2352480No protein-
 
lncRNA
---
ENST00000665975.1RMST-2272299No protein-
 
lncRNA
--GENCODE basic
ENST00000670745.1RMST-2332278No protein-
 
lncRNA
---
ENST00000693044.1RMST-2392231No protein-
 
lncRNA
---
ENST00000689144.1RMST-2362218No protein-
 
lncRNA
---
ENST00000657936.1RMST-2152210No protein-
 
lncRNA
---
ENST00000662772.1RMST-2212122No protein-
 
lncRNA
---
ENST00000639121.1RMST-2072099No protein-
 
lncRNA
--GENCODE basicTSL:5
ENST00000541282.5RMST-2022099No protein-
 
lncRNA
--TSL:2
ENST00000662330.1RMST-2192069No protein-
 
lncRNA
---
ENST00000656448.1RMST-2132061No protein-
 
lncRNA
---
ENST00000666664.1RMST-2282049No protein-
 
lncRNA
---
ENST00000666798.1RMST-2291980No protein-
 
lncRNA
--GENCODE basic
ENST00000664685.1RMST-2261902No protein-
 
lncRNA
--GENCODE basic
ENST00000667306.1RMST-2301902No protein-
 
lncRNA
--GENCODE basic
ENST00000654331.1RMST-2111794No protein-
 
lncRNA
---
ENST00000663509.1RMST-2231736No protein-
 
lncRNA
---
ENST00000664656.1RMST-2251730No protein-
 
lncRNA
---
ENST00000661686.1RMST-2181666No protein-
 
lncRNA
---
ENST00000662502.1RMST-2201587No protein-
 
lncRNA
---
ENST00000690936.1RMST-2381548No protein-
 
lncRNA
---
ENST00000670160.1RMST-2321474No protein-
 
lncRNA
---
ENST00000552411.2RMST-2061306No protein-
 
lncRNA
--TSL:3
ENST00000548886.2RMST-2051125No protein-
 
lncRNA
--TSL:1
ENST00000656458.1RMST-2141122No protein-
 
lncRNA
---
ENST00000652810.1RMST-2101064No protein-
 
lncRNA
---
ENST00000667445.1RMST-231971No protein-
 
lncRNA
---
ENST00000655366.1RMST-212859No protein-
 
lncRNA
---
ENST00000663659.1RMST-224793No protein-
 
lncRNA
---
Description

dual specificity phosphatase 22 [Source:HGNC Symbol;Acc:HGNC:16077]

Gene Synonyms

JKAP, JSP1, MKPX, VHX

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000419235.7DUSP22-2023075205aaENSP00000397459.2
 
Protein coding
CCDS69035Q9NRW4-2 NM_001286555.3MANE Select v0.95Ensembl CanonicalGENCODE basicAPPRIS P1TSL:2
ENST00000344450.9DUSP22-2011485184aaENSP00000345281.5
 
Protein coding
CCDS4468Q9NRW4-1 -GENCODE basicTSL:1
ENST00000604971.5DUSP22-2113824102aaENSP00000474505.1
 
Protein coding
-S4R3M1 -GENCODE basicTSL:2
ENST00000605035.5DUSP22-213123146aaENSP00000475061.1
 
Protein coding
-S4R378 -GENCODE basicTSL:2
ENST00000605315.5DUSP22-214867102aaENSP00000474827.1
 
Protein coding
-S4R3M1 -GENCODE basicTSL:5
ENST00000603453.5DUSP22-206804102aaENSP00000474646.1
 
Protein coding
-S4R3M1 -GENCODE basicTSL:4
ENST00000605863.5DUSP22-21655146aaENSP00000474000.1
 
Protein coding
-S4R378 -GENCODE basicTSL:4
ENST00000603881.5DUSP22-20946518aaENSP00000474450.1
 
Protein coding
-S4R3K1 -TSL:3CDS 3' incomplete
ENST00000603296.5DUSP22-20540575aaENSP00000474082.1
 
Protein coding
-S4R3A4 -TSL:3CDS 3' incomplete
ENST00000603795.5DUSP22-208116654aaENSP00000475106.1
 
Nonsense mediated decay
-S4R459 -TSL:3
ENST00000603726.5DUSP22-20758754aaENSP00000474330.1
 
Nonsense mediated decay
-S4R459 -TSL:5
ENST00000603290.1DUSP22-204548No protein-
 
Processed transcript
---TSL:4
ENST00000605391.5DUSP22-215547No protein-
 
Processed transcript
---TSL:4
ENST00000604914.5DUSP22-210536No protein-
 
Processed transcript
---TSL:4
ENST00000604988.1DUSP22-212503No protein-
 
Processed transcript
---TSL:5
ENST00000603005.5DUSP22-203352No protein-
 
Processed transcript
---TSL:3
Description

protein-L-isoaspartate (D-aspartate) O-methyltransferase 1 [Source:MGI Symbol;Acc:MGI:97502]

Gene Synonyms

PIMT, protein carboxyl methyltransferase

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000162606.8Pcmt1-2082757286aaENSMUSP00000123866.2
 
Protein coding
CCDS83677E0CYV0 GENCODE basicAPPRIS ALT1TSL:1
ENSMUST00000159917.8Pcmt1-2022491285aaENSMUSP00000124932.2
 
Protein coding
CCDS23687E9PWE0 GENCODE basicAPPRIS P3TSL:1
ENSMUST00000163085.8Pcmt1-2101132271aaENSMUSP00000125144.2
 
Protein coding
-F7D432 TSL:1CDS 5' incomplete
ENSMUST00000161428.8Pcmt1-2071073177aaENSMUSP00000123758.2
 
Protein coding
-F6V9F1 TSL:1CDS 5' incomplete
ENSMUST00000159977.2Pcmt1-20375623aaENSMUSP00000124135.2
 
Protein coding
-E0CYJ5 TSL:5CDS 3' incomplete
ENSMUST00000162682.8Pcmt1-20946565aaENSMUSP00000124246.2
 
Protein coding
-E0CYF2 TSL:3CDS 3' incomplete
ENSMUST00000161123.8Pcmt1-2062607111aaENSMUSP00000124100.2
 
Nonsense mediated decay
-F6TXE3 TSL:5CDS 5' incomplete
ENSMUST00000159835.8Pcmt1-201514No protein-
 
Processed transcript
--TSL:3
ENSMUST00000160250.2Pcmt1-2041369No protein-
 
Retained intron
--TSL:1
ENSMUST00000160517.2Pcmt1-205381No protein-
 
Retained intron
--TSL:2
Description

apolipoprotein L1 [Source:HGNC Symbol;Acc:HGNC:618]

Gene Synonyms

APOL

Location
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000397278.8APOL1-2022795398aaENSP00000380448.4
 
Protein coding
CCDS13926O14791-1 NM_003661.4MANE Select v0.95Ensembl CanonicalGENCODE basicAPPRIS ALT2TSL:1
ENST00000319136.8APOL1-2013000414aaENSP00000317674.4
 
Protein coding
CCDS13925O14791-2 -GENCODE basicAPPRIS P4TSL:1
ENST00000422706.5APOL1-2052901398aaENSP00000411507.1
 
Protein coding
CCDS13926O14791-1 -GENCODE basicAPPRIS ALT2TSL:3
ENST00000426053.5APOL1-2062808380aaENSP00000388477.1
 
Protein coding
CCDS46702O14791-3 -GENCODE basicAPPRIS ALT2TSL:2
ENST00000397279.8APOL1-2031564398aaENSP00000380449.4
 
Protein coding
CCDS13926O14791-1 -GENCODE basicAPPRIS ALT2TSL:5
ENST00000427990.5APOL1-207624159aaENSP00000391302.1
 
Protein coding
-B1AH96 -TSL:3CDS 3' incomplete
ENST00000438034.5APOL1-210566118aaENSP00000404525.1
 
Protein coding
-B1AH94 -TSL:4CDS 3' incomplete
ENST00000433768.5APOL1-209541141aaENSP00000392514.1
 
Protein coding
-B1AH95 -TSL:4CDS 3' incomplete
ENST00000422471.5APOL1-204561141aaENSP00000391206.1
 
Nonsense mediated decay
-B1AH95 -TSL:4
ENST00000431184.1APOL1-208550142aaENSP00000392857.1
 
Nonsense mediated decay
-F8WCH3 -TSL:4
ENST00000439680.5APOL1-211531123aaENSP00000397141.1
 
Nonsense mediated decay
-F8WB77 -TSL:4
ENST00000475519.5APOL1-212600No protein-
 
Retained intron
---TSL:4
Statistics

Exons: 6, Coding exons: 5, Transcript length: 624 bps, Translation length: 159 residues

Transcript Support Level (TSL)

TSL:3

Incomplete CDS

CDS 3' incomplete

Version

ENST00000427990.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript-based displays

    HASH(0x285d6d58)