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EnsemblEnsembl Home
Description

aldehyde dehydrogenase 9 family member A1 [Source:HGNC Symbol;Acc:HGNC:412]

Gene Synonyms

ALDH4, ALDH7, ALDH9, E3

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ALDH9A1-201ENST00000354775.42696518aaENSP00000346827.4
 
Protein coding
CCDS1250P49189-3 -Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
ALDH9A1-202ENST00000461664.5899No protein-
 
Processed transcript
---TSL:3
ALDH9A1-205ENST00000491436.1819No protein-
 
Processed transcript
---TSL:2
ALDH9A1-203ENST00000463610.1559No protein-
 
Processed transcript
---TSL:2
ALDH9A1-204ENST00000471457.1568No protein-
 
Retained intron
---TSL:2
Description

polynucleotide kinase 3'- phosphatase [Source:MGI Symbol;Acc:MGI:1891698]

Gene Synonyms

1810009G08Rik, PNK

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
Pnkp-201ENSMUST00000003044.142184522aaENSMUSP00000003044.8
 
Protein coding
CCDS39945G5E8N7 GENCODE basicAPPRIS P1TSL:1
Pnkp-203ENSMUST00000107876.81770522aaENSMUSP00000103508.2
 
Protein coding
CCDS39945G5E8N7 GENCODE basicAPPRIS P1TSL:1
Pnkp-202ENSMUST00000098478.71550486aaENSMUSP00000096078.4
 
Protein coding
CCDS71955E9Q9A5 GENCODE basicTSL:1
Pnkp-217ENSMUST00000208666.2765255aaENSMUSP00000147012.2
 
Protein coding
-A0A140LIZ1 TSL:5CDS 5' and 3' incomplete
Pnkp-213ENSMUST00000200892.2454151aaENSMUSP00000144163.2
 
Protein coding
-A0A0J9YUF9 TSL:2CDS 5' and 3' incomplete
Pnkp-211ENSMUST00000154968.221334aaENSMUSP00000115504.4
 
Protein coding
-D3YZV7 TSL:5CDS 3' incomplete
Pnkp-215ENSMUST00000202646.4444148aaENSMUSP00000144484.2
 
Non stop decay
-A0A0J9YV48 TSL:3CDS 5' incomplete
Pnkp-212ENSMUST00000155050.5167459aaENSMUSP00000144663.2
 
Nonsense mediated decay
-A0A0J9YVH5 TSL:5
Pnkp-204ENSMUST00000123015.81573180aaENSMUSP00000143862.2
 
Nonsense mediated decay
-A0A0J9YTV1 TSL:1
Pnkp-214ENSMUST00000201882.41497426aaENSMUSP00000144690.2
 
Nonsense mediated decay
-A0A0J9YVJ6 TSL:5
Pnkp-207ENSMUST00000139003.899053aaENSMUSP00000143904.2
 
Nonsense mediated decay
-A0A0J9YUT2 TSL:5
Pnkp-205ENSMUST00000124168.893353aaENSMUSP00000144330.2
 
Nonsense mediated decay
-A0A0J9YUT2 TSL:5
Pnkp-216ENSMUST00000208385.262480aaENSMUSP00000147079.2
 
Nonsense mediated decay
-A0A140LJ53 TSL:5CDS 5' incomplete
Pnkp-209ENSMUST00000145850.81975No protein-
 
Retained intron
--TSL:1
Pnkp-210ENSMUST00000152747.3860No protein-
 
Retained intron
--TSL:5
Pnkp-206ENSMUST00000126860.6672No protein-
 
Retained intron
--TSL:5
Pnkp-208ENSMUST00000144669.3455No protein-
 
Retained intron
--TSL:3
Description

calumenin [Source:MGI Symbol;Acc:MGI:1097158]

Gene Synonyms

9530075H20Rik

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
Calu-201ENSMUST00000031779.173229315aaENSMUSP00000031779.11
 
Protein coding
CCDS19957O35887 Q3TUF3 GENCODE basicAPPRIS P1TSL:1
Calu-202ENSMUST00000090481.142670315aaENSMUSP00000087967.8
 
Protein coding
CCDS19958Q6XLQ8 GENCODE basicTSL:1
Calu-206ENSMUST00000172974.83063227aaENSMUSP00000133390.2
 
Protein coding
-G3UWR0 GENCODE basicTSL:5
Calu-204ENSMUST00000156163.21137168aaENSMUSP00000133615.2
 
Protein coding
-G3UXA8 TSL:2CDS 5' incomplete
Calu-207ENSMUST00000173216.8673163aaENSMUSP00000134708.2
 
Protein coding
-G3V004 GENCODE basicTSL:5
Calu-205ENSMUST00000172607.264874aaENSMUSP00000133609.2
 
Protein coding
-G3UXA3 TSL:3CDS 5' incomplete
Calu-208ENSMUST00000173694.5611154aaENSMUSP00000133436.2
 
Protein coding
-G3UWV3 GENCODE basicTSL:5
Calu-209ENSMUST00000174096.71670141aaENSMUSP00000133945.3
 
Nonsense mediated decay
-G3UY49 TSL:5CDS 5' incomplete
Calu-203ENSMUST00000138523.2762No protein-
 
Processed transcript
--TSL:3
Description

cytoplasmic FMR1 interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:13760]

Gene Synonyms

PIR121

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
CYFIP2-222ENST00000620254.564521253aaENSP00000479968.1
 
Protein coding
CCDS75364Q96F07-2 NM_001037333.3MANE Select v0.93Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
CYFIP2-209ENST00000521420.563701227aaENSP00000430904.1
 
Protein coding
CCDS78078E7EVJ5 -GENCODE basicTSL:2
CYFIP2-221ENST00000618329.442561253aaENSP00000484819.1
 
Protein coding
CCDS75364Q96F07-2 -GENCODE basicAPPRIS P1TSL:1
CYFIP2-219ENST00000616178.442101278aaENSP00000479719.1
 
Protein coding
CCDS78077Q96F07-1 -GENCODE basicTSL:1
CYFIP2-201ENST00000435847.636731117aaENSP00000403793.3
 
Protein coding
-H7C229 -GENCODE basicTSL:2
CYFIP2-210ENST00000522463.534771057aaENSP00000428009.1
 
Protein coding
-E7EW33 -GENCODE basicTSL:2
CYFIP2-217ENST00000611075.41000188aaENSP00000479376.1
 
Protein coding
-A0A087WVE1 -TSL:2CDS 3' incomplete
CYFIP2-220ENST00000617629.4967295aaENSP00000480605.1
 
Protein coding
-A0A087WWZ1 -TSL:3CDS 3' incomplete
CYFIP2-218ENST00000611925.4925222aaENSP00000478058.1
 
Protein coding
-A0A087WTQ3 -TSL:3CDS 3' incomplete
CYFIP2-223ENST00000621516.191571aaENSP00000479211.1
 
Nonsense mediated decay
-A0A087WV63 -TSL:5
CYFIP2-211ENST00000522637.558068aaENSP00000428079.1
 
Nonsense mediated decay
-E5RKA3 -TSL:4
CYFIP2-208ENST00000520960.2576101aaENSP00000482739.1
 
Nonsense mediated decay
-A0A087WZL7 -TSL:2CDS 5' incomplete
CYFIP2-202ENST00000518456.1377No protein-
 
Processed transcript
---TSL:3
CYFIP2-224ENST00000622696.41294No protein-
 
Retained intron
---TSL:2
CYFIP2-215ENST00000523383.5916No protein-
 
Retained intron
---TSL:2
CYFIP2-205ENST00000519663.5892No protein-
 
Retained intron
---TSL:2
CYFIP2-207ENST00000520942.1771No protein-
 
Retained intron
---TSL:3
CYFIP2-204ENST00000518555.1745No protein-
 
Retained intron
---TSL:2
CYFIP2-214ENST00000522892.1583No protein-
 
Retained intron
---TSL:3
CYFIP2-212ENST00000522775.1582No protein-
 
Retained intron
---TSL:3
CYFIP2-206ENST00000520424.1579No protein-
 
Retained intron
---TSL:2
CYFIP2-213ENST00000522884.5579No protein-
 
Retained intron
---TSL:3
CYFIP2-216ENST00000524058.1562No protein-
 
Retained intron
---TSL:2
CYFIP2-203ENST00000518511.1409No protein-
 
Retained intron
---TSL:2
Description

nucleoporin 42 [Source:HGNC Symbol;Acc:HGNC:17010]

Gene Synonyms

CG1, H_RG271G13.9, NLP_1, NUPL2, hCG1

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
NUP42-201ENST00000258742.101571423aaENSP00000258742.5
 
Protein coding
CCDS5379O15504-1 NM_007342.3MANE Select v0.93Ensembl CanonicalGENCODE basicAPPRIS P2TSL:1
NUP42-203ENST00000413919.11329435aaENSP00000401475.1
 
Protein coding
-C9JYA1 -TSL:3CDS 3' incomplete
NUP42-202ENST00000410002.7680155aaENSP00000387330.3
 
Protein coding
-B4DT96 -GENCODE basicAPPRIS ALT2TSL:2
NUP42-212ENST00000548367.224983aaENSP00000482736.1
 
Protein coding
-A0A087WZL5 -GENCODE basicTSL:5
NUP42-205ENST00000438012.51653224aaENSP00000415511.1
 
Nonsense mediated decay
-O15504-2 -TSL:2
NUP42-204ENST00000437140.5128544aaENSP00000406677.1
 
Nonsense mediated decay
-F8WC66 -TSL:5
NUP42-209ENST00000487595.5623No protein-
 
Processed transcript
---TSL:3
NUP42-206ENST00000477844.12529No protein-
 
Retained intron
---TSL:1
NUP42-207ENST00000485250.52010No protein-
 
Retained intron
---TSL:5
NUP42-210ENST00000489145.1776No protein-
 
Retained intron
---TSL:2
NUP42-211ENST00000497500.5739No protein-
 
Retained intron
---TSL:2
NUP42-208ENST00000486136.5350No protein-
 
Retained intron
---TSL:2
Description

sec1 family domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20726]

Gene Synonyms

C14orf163, KIAA0917, RA410, SLY1, STXBP1L2

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
SCFD1-203ENST00000458591.72190642aaENSP00000390783.2
 
Protein coding
CCDS9639Q8WVM8-1 NM_016106.4MANE Select v0.93Ensembl CanonicalGENCODE basicAPPRIS P2TSL:1
SCFD1-252ENST00000678124.14041575aaENSP00000503029.1
 
Protein coding
CCDS45092--GENCODE basic
SCFD1-207ENST00000544052.62058575aaENSP00000443010.2
 
Protein coding
CCDS45092Q8WVM8-3 -GENCODE basicTSL:2
SCFD1-202ENST00000396629.62021550aaENSP00000379870.2
 
Protein coding
CCDS58308Q8WVM8-2 -GENCODE basicTSL:2
SCFD1-205ENST00000469043.24736289aaENSP00000452448.2
 
Protein coding
-H0YJY1 -GENCODE basicTSL:2
SCFD1-241ENST00000677413.13486572aaENSP00000503070.1
 
Protein coding
---GENCODE basic
SCFD1-231ENST00000676812.13446612aaENSP00000504504.1
 
Protein coding
---GENCODE basic
SCFD1-256ENST00000678402.13424601aaENSP00000503444.1
 
Protein coding
---GENCODE basic
SCFD1-261ENST00000678669.13386592aaENSP00000504126.1
 
Protein coding
---GENCODE basic
SCFD1-227ENST00000676520.13374483aaENSP00000504658.1
 
Protein coding
---GENCODE basic
SCFD1-262ENST00000678716.13296483aaENSP00000503125.1
 
Protein coding
---GENCODE basic
SCFD1-259ENST00000678579.13260453aaENSP00000503776.1
 
Protein coding
---GENCODE basic
SCFD1-229ENST00000676674.13156457aaENSP00000502860.1
 
Protein coding
-B7Z5N7 -GENCODE basic
SCFD1-240ENST00000677340.12171616aaENSP00000504124.1
 
Protein coding
---GENCODE basic
SCFD1-226ENST00000676509.12126641aaENSP00000504739.1
 
Protein coding
---GENCODE basicAPPRIS ALT2
SCFD1-228ENST00000676658.11995620aaENSP00000503347.1
 
Protein coding
---GENCODE basic
SCFD1-271ENST00000679165.11962591aaENSP00000503787.1
 
Protein coding
---GENCODE basic
SCFD1-222ENST00000557076.61729513aaENSP00000450755.2
 
Protein coding
-G3V2M8 -GENCODE basicTSL:3
SCFD1-236ENST00000676954.11580291aaENSP00000504250.1
 
Protein coding
---GENCODE basic
SCFD1-210ENST00000553693.61538410aaENSP00000452308.2
 
Protein coding
-G3V5E2 -GENCODE basicTSL:3
SCFD1-267ENST00000679075.14347216aaENSP00000504582.1
 
Nonsense mediated decay
----
SCFD1-268ENST00000679096.13919448aaENSP00000503433.1
 
Nonsense mediated decay
----
SCFD1-225ENST00000676473.13589149aaENSP00000504489.1
 
Nonsense mediated decay
----
SCFD1-249ENST00000677974.13550108aaENSP00000503716.1
 
Nonsense mediated decay
----
SCFD1-234ENST00000676876.1344585aaENSP00000503666.1
 
Nonsense mediated decay
----
SCFD1-224ENST00000676465.1340638aaENSP00000503575.1
 
Nonsense mediated decay
----
SCFD1-247ENST00000677690.1327054aaENSP00000504114.1
 
Nonsense mediated decay
----
SCFD1-206ENST00000484733.6230855aaENSP00000452178.1
 
Nonsense mediated decay
-G3V551 -TSL:5
SCFD1-264ENST00000678760.12249422aaENSP00000504309.1
 
Nonsense mediated decay
----
SCFD1-246ENST00000677637.12138271aaENSP00000504375.1
 
Nonsense mediated decay
----
SCFD1-211ENST00000554437.62135465aaENSP00000450546.2
 
Nonsense mediated decay
-H0YIZ7 -TSL:3
SCFD1-238ENST00000677176.12135271aaENSP00000504074.1
 
Nonsense mediated decay
----
SCFD1-257ENST00000678475.12122369aaENSP00000504339.1
 
Nonsense mediated decay
----
SCFD1-254ENST00000678396.12105105aaENSP00000503724.1
 
Nonsense mediated decay
----
SCFD1-243ENST00000677456.12069271aaENSP00000503191.1
 
Nonsense mediated decay
----
SCFD1-255ENST00000678399.12062532aaENSP00000504310.1
 
Nonsense mediated decay
----
SCFD1-269ENST00000679102.12049487aaENSP00000503287.1
 
Nonsense mediated decay
----
SCFD1-201ENST00000311943.112016163aaENSP00000309417.7
 
Nonsense mediated decay
-J3KNG4 -TSL:2
SCFD1-233ENST00000676834.11970420aaENSP00000503338.1
 
Nonsense mediated decay
----
SCFD1-204ENST00000463622.6194348aaENSP00000451298.1
 
Nonsense mediated decay
-G3V3K9 -TSL:2
SCFD1-272ENST00000679342.11923271aaENSP00000504420.1
 
Nonsense mediated decay
----
SCFD1-235ENST00000676914.11870420aaENSP00000504271.1
 
Nonsense mediated decay
----
SCFD1-221ENST00000556768.5182975aaENSP00000451811.1
 
Nonsense mediated decay
-G3V4I1 -TSL:1
SCFD1-215ENST00000555259.51553121aaENSP00000452323.1
 
Nonsense mediated decay
-G3V5F3 -TSL:1
SCFD1-213ENST00000554776.5583102aaENSP00000452046.1
 
Nonsense mediated decay
-H0YJS6 -TSL:5CDS 5' incomplete
SCFD1-223ENST00000557713.555692aaENSP00000451064.1
 
Nonsense mediated decay
-G3V363 -TSL:4
SCFD1-212ENST00000554486.1819No protein-
 
Processed transcript
---TSL:3
SCFD1-214ENST00000554819.5608No protein-
 
Processed transcript
---TSL:5
SCFD1-260ENST00000678637.15328No protein-
 
Retained intron
----
SCFD1-237ENST00000677027.14584No protein-
 
Retained intron
----
SCFD1-258ENST00000678516.14241No protein-
 
Retained intron
----
SCFD1-270ENST00000679153.14175No protein-
 
Retained intron
----
SCFD1-265ENST00000678802.14171No protein-
 
Retained intron
----
SCFD1-266ENST00000678858.14154No protein-
 
Retained intron
----
SCFD1-245ENST00000677617.14125No protein-
 
Retained intron
----
SCFD1-263ENST00000678735.14025No protein-
 
Retained intron
----
SCFD1-239ENST00000677334.13857No protein-
 
Retained intron
----
SCFD1-253ENST00000678185.13312No protein-
 
Retained intron
----
SCFD1-230ENST00000676750.12705No protein-
 
Retained intron
----
SCFD1-250ENST00000678006.12372No protein-
 
Retained intron
----
SCFD1-232ENST00000676817.12358No protein-
 
Retained intron
----
SCFD1-244ENST00000677576.12147No protein-
 
Retained intron
----
SCFD1-251ENST00000678104.12025No protein-
 
Retained intron
----
SCFD1-248ENST00000677833.11813No protein-
 
Retained intron
----
SCFD1-242ENST00000677445.11470No protein-
 
Retained intron
----
SCFD1-219ENST00000556486.5974No protein-
 
Retained intron
---TSL:2
SCFD1-220ENST00000556534.1864No protein-
 
Retained intron
---TSL:5
SCFD1-208ENST00000553278.1795No protein-
 
Retained intron
---TSL:2
SCFD1-209ENST00000553280.1574No protein-
 
Retained intron
---TSL:2
SCFD1-216ENST00000555550.1541No protein-
 
Retained intron
---TSL:4
SCFD1-218ENST00000556413.1512No protein-
 
Retained intron
---TSL:3
SCFD1-217ENST00000556256.1428No protein-
 
Retained intron
---TSL:2
Statistics

Exons: 24, Coding exons: 24, Transcript length: 3,386 bps, Translation length: 592 residues

Version

ENST00000678669.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays

    HASH(0x251ec8d0)