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Description

sodium voltage-gated channel alpha subunit 5 [Source:HGNC Symbol;Acc:HGNC:10593]

Gene Synonyms

CDCD2, CMD1E, CMPD2, HB1, HB2, HBBD, HH1, ICCD, IVF, LQT3, Nav1.5, PFHB1, SSS1

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
SCN5A-205ENST00000423572.785162015aaENSP00000398266.2
 
Protein coding
CCDS46797Q14524-2 NM_000335.5MANE Select v0.93Ensembl CanonicalGENCODE basicAPPRIS ALT2TSL:1
SCN5A-202ENST00000333535.985192016aaENSP00000328968.4
 
Protein coding
CCDS46796Q14524-1 -GENCODE basicAPPRIS P4TSL:1
SCN5A-203ENST00000413689.685192016aaENSP00000410257.1
 
Protein coding
CCDS46799H9KVD2 NM_001099404.2MANE Plus Clinical v0.93GENCODE basicAPPRIS ALT2TSL:5
SCN5A-204ENST00000414099.683031998aaENSP00000398962.2
 
Protein coding
CCDS46798E9PG18 -GENCODE basicTSL:1
SCN5A-208ENST00000455624.671701983aaENSP00000399524.2
 
Protein coding
CCDS54570E9PHB6 -GENCODE basicTSL:1
SCN5A-207ENST00000450102.662841962aaENSP00000403355.2
 
Protein coding
CCDS54569K4DIA1 -GENCODE basicAPPRIS ALT2TSL:1
SCN5A-206ENST00000449557.658981962aaENSP00000413996.2
 
Protein coding
-A0A0A0MT39 -GENCODE basicAPPRIS ALT2TSL:5
SCN5A-201ENST00000327956.633565aaENSP00000333674.6
 
Protein coding
-A3EY21 -TSL:1CDS 3' incomplete
SCN5A-209ENST00000464652.1591No protein-
 
Processed transcript
---TSL:1
SCN5A-211ENST00000491944.11382No protein-
 
Retained intron
---TSL:1
SCN5A-210ENST00000476683.1774No protein-
 
Retained intron
---TSL:3
Description

syntaxin 5A [Source:MGI Symbol;Acc:MGI:1928483]

Gene Synonyms

0610031F24Rik, D19Ertd627e, syntaxin 5

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
Stx5a-213ENSMUST00000176381.82251355aaENSMUSP00000134854.2
 
Protein coding
CCDS29542Q8K1E0-1 GENCODE basicAPPRIS P1TSL:1
Stx5a-202ENSMUST00000073430.142112355aaENSMUSP00000073136.8
 
Protein coding
CCDS29542Q8K1E0-1 GENCODE basicAPPRIS P1TSL:1
Stx5a-201ENSMUST00000010254.161780442aaENSMUSP00000010254.10
 
Protein coding
-I1E4X1 GENCODE basicTSL:5
Stx5a-206ENSMUST00000175901.81153262aaENSMUSP00000134951.2
 
Protein coding
-H3BJE3 TSL:5CDS 3' incomplete
Stx5a-217ENSMUST00000176968.21049109aaENSMUSP00000135468.2
 
Protein coding
-H3BKP3 TSL:2CDS 3' incomplete
Stx5a-219ENSMUST00000177373.8995259aaENSMUSP00000134794.2
 
Protein coding
-H3BJ02 GENCODE basicTSL:5
Stx5a-215ENSMUST00000176570.256357aaENSMUSP00000134892.2
 
Protein coding
-H3BJ89 GENCODE basicTSL:2
Stx5a-212ENSMUST00000176314.837877aaENSMUSP00000135348.2
 
Protein coding
-H3BKD6 TSL:3CDS 3' incomplete
Stx5a-208ENSMUST00000176013.82106144aaENSMUSP00000135465.2
 
Nonsense mediated decay
-H3BKP0 TSL:5
Stx5a-205ENSMUST00000175872.81720234aaENSMUSP00000135416.2
 
Nonsense mediated decay
-H3BKJ7 TSL:5
Stx5a-218ENSMUST00000177322.81697101aaENSMUSP00000135624.2
 
Nonsense mediated decay
-H3BL25 TSL:5
Stx5a-209ENSMUST00000176093.23015No protein-
 
Retained intron
--TSL:NA
Stx5a-211ENSMUST00000176260.81025No protein-
 
Retained intron
--TSL:5
Stx5a-204ENSMUST00000175834.2789No protein-
 
Retained intron
--TSL:NA
Stx5a-207ENSMUST00000176009.2774No protein-
 
Retained intron
--TSL:3
Stx5a-210ENSMUST00000176182.8670No protein-
 
Retained intron
--TSL:2
Stx5a-214ENSMUST00000176404.2584No protein-
 
Retained intron
--TSL:3
Stx5a-203ENSMUST00000175642.2523No protein-
 
Retained intron
--TSL:2
Stx5a-216ENSMUST00000176844.2419No protein-
 
Retained intron
--TSL:1
Description

calcium voltage-gated channel subunit alpha1 A [Source:HGNC Symbol;Acc:HGNC:1388]

Gene Synonyms

APCA, CACNL1A4, Cav2.1, EA2, FHM, HPCA, MHP, MHP1, SCA6

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
CACNA1A-201ENST00000360228.1186472506aaENSP00000353362.5
 
Protein coding
CCDS45998O00555-8 NM_001127222.2MANE Select v0.93Ensembl CanonicalGENCODE basicAPPRIS P4TSL:1
CACNA1A-256ENST00000638009.286452261aaENSP00000489913.1
 
Protein coding
CCDS45999O00555-3 -GENCODE basicAPPRIS ALT2TSL:1
CACNA1A-257ENST00000638029.178142512aaENSP00000489829.1
 
Protein coding
CCDS82300A0A087WW63 -GENCODE basicAPPRIS ALT2TSL:5
CACNA1A-239ENST00000637432.178092266aaENSP00000490617.1
 
Protein coding
CCDS82301O00555-2 -GENCODE basicAPPRIS ALT2TSL:5
CACNA1A-226ENST00000636549.167922263aaENSP00000490578.1
 
Protein coding
CCDS82302B5TYJ1 -GENCODE basicAPPRIS ALT2TSL:5
CACNA1A-217ENST00000635895.186572261aaENSP00000490323.1
 
Protein coding
-A0A384DVW2 -GENCODE basicAPPRIS ALT2TSL:5
CACNA1A-246ENST00000637769.186482507aaENSP00000489778.1
 
Protein coding
-A0A1B0GTN7 -GENCODE basicAPPRIS ALT2TSL:1
CACNA1A-245ENST00000637736.183402460aaENSP00000489861.1
 
Protein coding
-A0A1B0GTW2 -GENCODE basicTSL:5
CACNA1A-224ENST00000636389.181372302aaENSP00000489992.1
 
Protein coding
-A0A1B0GU74 -GENCODE basicAPPRIS ALT2TSL:5
CACNA1A-202ENST00000573710.775692508aaENSP00000460092.3
 
Protein coding
-A0A1C7CYY9 -GENCODE basicAPPRIS ALT2TSL:5
CACNA1A-214ENST00000635727.175362507aaENSP00000490001.1
 
Protein coding
-A0A1B0GU81 -GENCODE basicAPPRIS ALT2TSL:5
CACNA1A-220ENST00000636012.175002495aaENSP00000490223.1
 
Protein coding
-A0A1B0GUS3 -GENCODE basicAPPRIS ALT2TSL:5
CACNA1A-237ENST00000637276.171352249aaENSP00000489777.1
 
Protein coding
-O00555-5 -GENCODE basicAPPRIS ALT2TSL:5
CACNA1A-259ENST00000664864.169872328aaENSP00000499449.1
 
Protein coding
-A0A590UJK2 -GENCODE basicAPPRIS ALT2
CACNA1A-252ENST00000637927.168472262aaENSP00000489715.1
 
Protein coding
-A0A1B0GTI4 -GENCODE basicAPPRIS ALT2TSL:5
CACNA1A-209ENST00000587525.53765981aaENSP00000467729.1
 
Protein coding
-K7EQ95 -TSL:1CDS 5' incomplete
CACNA1A-206ENST00000585802.62693881aaENSP00000465598.2
 
Protein coding
-K7EKF7 -TSL:5CDS 5' incomplete
CACNA1A-225ENST00000636473.11653550aaENSP00000490173.1
 
Protein coding
-A0A1B0GUM7 -TSL:5CDS 5' incomplete
CACNA1A-211ENST00000592864.3162389aaENSP00000464729.2
 
Protein coding
-K7EIF8 -GENCODE basicTSL:3
CACNA1A-250ENST00000637819.11378459aaENSP00000490686.1
 
Protein coding
-A0A1B0GVX1 -TSL:5CDS 5' and 3' incomplete
CACNA1A-238ENST00000637297.1637212aaENSP00000489692.1
 
Protein coding
-A0A1B0GTG6 -TSL:5CDS 5' and 3' incomplete
CACNA1A-229ENST00000636768.1103475aaENSP00000490190.1
 
Nonsense mediated decay
-A0A1B0GUP3 -TSL:5CDS 5' incomplete
CACNA1A-205ENST00000574974.390381aaENSP00000459963.2
 
Nonsense mediated decay
-I3L2V5 -TSL:5
CACNA1A-203ENST00000573891.689679aaENSP00000460276.1
 
Nonsense mediated decay
-I3L391 -TSL:5CDS 5' incomplete
CACNA1A-248ENST00000637777.172826aaENSP00000490475.1
 
Nonsense mediated decay
-A0A1B0GVD8 -TSL:5CDS 5' incomplete
CACNA1A-222ENST00000636058.165644aaENSP00000490075.1
 
Nonsense mediated decay
-A0A1B0GUE5 -TSL:5CDS 5' incomplete
CACNA1A-254ENST00000637966.11887No protein-
 
Processed transcript
---TSL:5
CACNA1A-204ENST00000574822.6806No protein-
 
Processed transcript
---TSL:5
CACNA1A-208ENST00000587451.2673No protein-
 
Processed transcript
---TSL:1
CACNA1A-241ENST00000637485.15481No protein-
 
Retained intron
---TSL:5
CACNA1A-231ENST00000636966.13938No protein-
 
Retained intron
---TSL:5
CACNA1A-253ENST00000637952.13894No protein-
 
Retained intron
---TSL:NA
CACNA1A-247ENST00000637774.13381No protein-
 
Retained intron
---TSL:5
CACNA1A-210ENST00000590205.23340No protein-
 
Retained intron
---TSL:NA
CACNA1A-242ENST00000637616.13081No protein-
 
Retained intron
---TSL:5
CACNA1A-227ENST00000636610.13011No protein-
 
Retained intron
---TSL:5
CACNA1A-236ENST00000637168.12979No protein-
 
Retained intron
---TSL:NA
CACNA1A-216ENST00000635786.12840No protein-
 
Retained intron
---TSL:5
CACNA1A-234ENST00000637004.12829No protein-
 
Retained intron
---TSL:5
CACNA1A-219ENST00000635988.12548No protein-
 
Retained intron
---TSL:5
CACNA1A-230ENST00000636816.11978No protein-
 
Retained intron
---TSL:5
CACNA1A-240ENST00000637475.11975No protein-
 
Retained intron
---TSL:NA
CACNA1A-233ENST00000636984.11968No protein-
 
Retained intron
---TSL:5
CACNA1A-215ENST00000635742.11910No protein-
 
Retained intron
---TSL:5
CACNA1A-243ENST00000637625.11890No protein-
 
Retained intron
---TSL:NA
CACNA1A-218ENST00000635917.11832No protein-
 
Retained intron
---TSL:5
CACNA1A-232ENST00000636974.11783No protein-
 
Retained intron
---TSL:5
CACNA1A-212ENST00000593160.21651No protein-
 
Retained intron
---TSL:5
CACNA1A-223ENST00000636074.11516No protein-
 
Retained intron
---TSL:NA
CACNA1A-255ENST00000637981.11346No protein-
 
Retained intron
---TSL:5
CACNA1A-244ENST00000637692.11245No protein-
 
Retained intron
---TSL:5
CACNA1A-235ENST00000637117.11124No protein-
 
Retained intron
---TSL:5
CACNA1A-249ENST00000637809.1871No protein-
 
Retained intron
---TSL:5
CACNA1A-228ENST00000636670.1740No protein-
 
Retained intron
---TSL:NA
CACNA1A-251ENST00000637832.1701No protein-
 
Retained intron
---TSL:5
CACNA1A-213ENST00000593267.2567No protein-
 
Retained intron
---TSL:2
CACNA1A-221ENST00000636022.1552No protein-
 
Retained intron
---TSL:3
CACNA1A-258ENST00000638114.1517No protein-
 
Retained intron
---TSL:3
CACNA1A-207ENST00000586190.1459No protein-
 
Retained intron
---TSL:3
Description

sec1 family domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20726]

Gene Synonyms

C14orf163, KIAA0917, RA410, SLY1, STXBP1L2

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
SCFD1-203ENST00000458591.72190642aaENSP00000390783.2
 
Protein coding
CCDS9639Q8WVM8-1 NM_016106.4MANE Select v0.93Ensembl CanonicalGENCODE basicAPPRIS P2TSL:1
SCFD1-252ENST00000678124.14041575aaENSP00000503029.1
 
Protein coding
CCDS45092--GENCODE basic
SCFD1-207ENST00000544052.62058575aaENSP00000443010.2
 
Protein coding
CCDS45092Q8WVM8-3 -GENCODE basicTSL:2
SCFD1-202ENST00000396629.62021550aaENSP00000379870.2
 
Protein coding
CCDS58308Q8WVM8-2 -GENCODE basicTSL:2
SCFD1-205ENST00000469043.24736289aaENSP00000452448.2
 
Protein coding
-H0YJY1 -GENCODE basicTSL:2
SCFD1-241ENST00000677413.13486572aaENSP00000503070.1
 
Protein coding
---GENCODE basic
SCFD1-231ENST00000676812.13446612aaENSP00000504504.1
 
Protein coding
---GENCODE basic
SCFD1-256ENST00000678402.13424601aaENSP00000503444.1
 
Protein coding
---GENCODE basic
SCFD1-261ENST00000678669.13386592aaENSP00000504126.1
 
Protein coding
---GENCODE basic
SCFD1-227ENST00000676520.13374483aaENSP00000504658.1
 
Protein coding
---GENCODE basic
SCFD1-262ENST00000678716.13296483aaENSP00000503125.1
 
Protein coding
---GENCODE basic
SCFD1-259ENST00000678579.13260453aaENSP00000503776.1
 
Protein coding
---GENCODE basic
SCFD1-229ENST00000676674.13156457aaENSP00000502860.1
 
Protein coding
-B7Z5N7 -GENCODE basic
SCFD1-240ENST00000677340.12171616aaENSP00000504124.1
 
Protein coding
---GENCODE basic
SCFD1-226ENST00000676509.12126641aaENSP00000504739.1
 
Protein coding
---GENCODE basicAPPRIS ALT2
SCFD1-228ENST00000676658.11995620aaENSP00000503347.1
 
Protein coding
---GENCODE basic
SCFD1-271ENST00000679165.11962591aaENSP00000503787.1
 
Protein coding
---GENCODE basic
SCFD1-222ENST00000557076.61729513aaENSP00000450755.2
 
Protein coding
-G3V2M8 -GENCODE basicTSL:3
SCFD1-236ENST00000676954.11580291aaENSP00000504250.1
 
Protein coding
---GENCODE basic
SCFD1-210ENST00000553693.61538410aaENSP00000452308.2
 
Protein coding
-G3V5E2 -GENCODE basicTSL:3
SCFD1-267ENST00000679075.14347216aaENSP00000504582.1
 
Nonsense mediated decay
----
SCFD1-268ENST00000679096.13919448aaENSP00000503433.1
 
Nonsense mediated decay
----
SCFD1-225ENST00000676473.13589149aaENSP00000504489.1
 
Nonsense mediated decay
----
SCFD1-249ENST00000677974.13550108aaENSP00000503716.1
 
Nonsense mediated decay
----
SCFD1-234ENST00000676876.1344585aaENSP00000503666.1
 
Nonsense mediated decay
----
SCFD1-224ENST00000676465.1340638aaENSP00000503575.1
 
Nonsense mediated decay
----
SCFD1-247ENST00000677690.1327054aaENSP00000504114.1
 
Nonsense mediated decay
----
SCFD1-206ENST00000484733.6230855aaENSP00000452178.1
 
Nonsense mediated decay
-G3V551 -TSL:5
SCFD1-264ENST00000678760.12249422aaENSP00000504309.1
 
Nonsense mediated decay
----
SCFD1-246ENST00000677637.12138271aaENSP00000504375.1
 
Nonsense mediated decay
----
SCFD1-211ENST00000554437.62135465aaENSP00000450546.2
 
Nonsense mediated decay
-H0YIZ7 -TSL:3
SCFD1-238ENST00000677176.12135271aaENSP00000504074.1
 
Nonsense mediated decay
----
SCFD1-257ENST00000678475.12122369aaENSP00000504339.1
 
Nonsense mediated decay
----
SCFD1-254ENST00000678396.12105105aaENSP00000503724.1
 
Nonsense mediated decay
----
SCFD1-243ENST00000677456.12069271aaENSP00000503191.1
 
Nonsense mediated decay
----
SCFD1-255ENST00000678399.12062532aaENSP00000504310.1
 
Nonsense mediated decay
----
SCFD1-269ENST00000679102.12049487aaENSP00000503287.1
 
Nonsense mediated decay
----
SCFD1-201ENST00000311943.112016163aaENSP00000309417.7
 
Nonsense mediated decay
-J3KNG4 -TSL:2
SCFD1-233ENST00000676834.11970420aaENSP00000503338.1
 
Nonsense mediated decay
----
SCFD1-204ENST00000463622.6194348aaENSP00000451298.1
 
Nonsense mediated decay
-G3V3K9 -TSL:2
SCFD1-272ENST00000679342.11923271aaENSP00000504420.1
 
Nonsense mediated decay
----
SCFD1-235ENST00000676914.11870420aaENSP00000504271.1
 
Nonsense mediated decay
----
SCFD1-221ENST00000556768.5182975aaENSP00000451811.1
 
Nonsense mediated decay
-G3V4I1 -TSL:1
SCFD1-215ENST00000555259.51553121aaENSP00000452323.1
 
Nonsense mediated decay
-G3V5F3 -TSL:1
SCFD1-213ENST00000554776.5583102aaENSP00000452046.1
 
Nonsense mediated decay
-H0YJS6 -TSL:5CDS 5' incomplete
SCFD1-223ENST00000557713.555692aaENSP00000451064.1
 
Nonsense mediated decay
-G3V363 -TSL:4
SCFD1-212ENST00000554486.1819No protein-
 
Processed transcript
---TSL:3
SCFD1-214ENST00000554819.5608No protein-
 
Processed transcript
---TSL:5
SCFD1-260ENST00000678637.15328No protein-
 
Retained intron
----
SCFD1-237ENST00000677027.14584No protein-
 
Retained intron
----
SCFD1-258ENST00000678516.14241No protein-
 
Retained intron
----
SCFD1-270ENST00000679153.14175No protein-
 
Retained intron
----
SCFD1-265ENST00000678802.14171No protein-
 
Retained intron
----
SCFD1-266ENST00000678858.14154No protein-
 
Retained intron
----
SCFD1-245ENST00000677617.14125No protein-
 
Retained intron
----
SCFD1-263ENST00000678735.14025No protein-
 
Retained intron
----
SCFD1-239ENST00000677334.13857No protein-
 
Retained intron
----
SCFD1-253ENST00000678185.13312No protein-
 
Retained intron
----
SCFD1-230ENST00000676750.12705No protein-
 
Retained intron
----
SCFD1-250ENST00000678006.12372No protein-
 
Retained intron
----
SCFD1-232ENST00000676817.12358No protein-
 
Retained intron
----
SCFD1-244ENST00000677576.12147No protein-
 
Retained intron
----
SCFD1-251ENST00000678104.12025No protein-
 
Retained intron
----
SCFD1-248ENST00000677833.11813No protein-
 
Retained intron
----
SCFD1-242ENST00000677445.11470No protein-
 
Retained intron
----
SCFD1-219ENST00000556486.5974No protein-
 
Retained intron
---TSL:2
SCFD1-220ENST00000556534.1864No protein-
 
Retained intron
---TSL:5
SCFD1-208ENST00000553278.1795No protein-
 
Retained intron
---TSL:2
SCFD1-209ENST00000553280.1574No protein-
 
Retained intron
---TSL:2
SCFD1-216ENST00000555550.1541No protein-
 
Retained intron
---TSL:4
SCFD1-218ENST00000556413.1512No protein-
 
Retained intron
---TSL:3
SCFD1-217ENST00000556256.1428No protein-
 
Retained intron
---TSL:2
Statistics

Exons: 24, Coding exons: 22, Transcript length: 3,486 bps, Translation length: 572 residues

Version

ENST00000677413.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays

    HASH(0x253ccbd0)