Human (GRCh38.p14)
Description

serine palmitoyltransferase long chain base subunit 1 [Source:HGNC Symbol;Acc:HGNC:11277]

Gene Synonyms

HLCB1, HSAN1, HSN1, LCB1, SPTI

Location
About this transcript

This transcript has 15 exons, is associated with 35149 variant alleles and maps to 597 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000262554.7SPTLC1-2012783473aaENSP00000262554.2
 
Protein coding
CCDS6692O15269-1 NM_006415.4MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000686600.1SPTLC1-2132968504aaENSP00000509268.1
 
Protein coding
A0A8I5KUM4 -GENCODE basic
ENST00000687972.1SPTLC1-2172807493aaENSP00000509208.1
 
Protein coding
A0A8I5QKQ8 -GENCODE basic
ENST00000461132.2SPTLC1-203184287aaENSP00000509096.1
 
Protein coding
A0A8I5KWE0 -GENCODE basicTSL:2
ENST00000692363.1SPTLC1-223119787aaENSP00000509481.1
 
Protein coding
A0A8I5KWE0 -GENCODE basic
ENST00000337841.4SPTLC1-202946143aaENSP00000337635.4
 
Protein coding
CCDS6693O15269-2 -GENCODE basicTSL:1
ENST00000687817.1SPTLC1-2164920144aaENSP00000508926.1
 
Nonsense mediated decay
A0A2R8Y6A2 --
ENST00000689401.1SPTLC1-219311042aaENSP00000510251.1
 
Nonsense mediated decay
A0A8I5QJP4 --
ENST00000687427.1SPTLC1-2153022504aaENSP00000509426.1
 
Nonsense mediated decay
A0A8I5KUM4 --
ENST00000646534.1SPTLC1-2122982144aaENSP00000495388.1
 
Nonsense mediated decay
A0A2R8Y6A2 --
ENST00000690139.1SPTLC1-2222892143aaENSP00000510483.1
 
Nonsense mediated decay
CCDS6693O15269-2 --
ENST00000644140.1SPTLC1-2102792143aaENSP00000493933.1
 
Nonsense mediated decay
A0A2R8Y4S0 --
ENST00000642671.1SPTLC1-208228922aaENSP00000495764.1
 
Nonsense mediated decay
A0A2R8Y763 -CDS 5' incomplete
ENST00000643599.1SPTLC1-209204222aaENSP00000494770.1
 
Nonsense mediated decay
A0A2R8Y763 -CDS 5' incomplete
ENST00000646481.1SPTLC1-211172722aaENSP00000496627.1
 
Nonsense mediated decay
A0A2R8Y763 -CDS 5' incomplete
ENST00000689423.1SPTLC1-220172142aaENSP00000508519.1
 
Nonsense mediated decay
A0A8I5QJP4 --
ENST00000693147.1SPTLC1-225151142aaENSP00000510358.1
 
Nonsense mediated decay
A0A8I5QJP4 --
ENST00000488921.6SPTLC1-207131142aaENSP00000510034.1
 
Nonsense mediated decay
A0A8I5QJP4 -TSL:3
ENST00000690095.1SPTLC1-2213132No protein-
 
Protein coding CDS not defined
---
ENST00000686799.1SPTLC1-2143043No protein-
 
Protein coding CDS not defined
---
ENST00000689261.1SPTLC1-2182651No protein-
 
Protein coding CDS not defined
---
ENST00000469778.1SPTLC1-204490No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000477888.1SPTLC1-205359No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000692458.1SPTLC1-2242810No protein-
 
Retained intron
---
ENST00000482632.6SPTLC1-2061738No protein-
 
Retained intron
--TSL:5
Statistics

Exons: 15, Coding exons: 0, Transcript length: 2,810 bps,

Version

ENST00000692458.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]