Human (GRCh38.p14)
Description

serine palmitoyltransferase long chain base subunit 1 [Source:HGNC Symbol;Acc:HGNC:11277]

Gene Synonyms

HLCB1, HSAN1, HSN1, LCB1, SPTI

Location
About this transcript

This transcript has 17 exons, is annotated with 1 domain and feature, is associated with 31725 variant alleles and maps to 269 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000262554.7SPTLC1-2012783473aaENSP00000262554.2
 
Protein coding
CCDS6692O15269-1 NM_006415.4MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000686600.1SPTLC1-2132968504aaENSP00000509268.1
 
Protein coding
A0A8I5KUM4 -GENCODE basic
ENST00000687972.1SPTLC1-2172807493aaENSP00000509208.1
 
Protein coding
A0A8I5QKQ8 -GENCODE basic
ENST00000461132.2SPTLC1-203184287aaENSP00000509096.1
 
Protein coding
A0A8I5KWE0 -GENCODE basicTSL:2
ENST00000692363.1SPTLC1-223119787aaENSP00000509481.1
 
Protein coding
A0A8I5KWE0 -GENCODE basic
ENST00000337841.4SPTLC1-202946143aaENSP00000337635.4
 
Protein coding
CCDS6693O15269-2 -GENCODE basicTSL:1
ENST00000687817.1SPTLC1-2164920144aaENSP00000508926.1
 
Nonsense mediated decay
A0A2R8Y6A2 --
ENST00000689401.1SPTLC1-219311042aaENSP00000510251.1
 
Nonsense mediated decay
A0A8I5QJP4 --
ENST00000687427.1SPTLC1-2153022504aaENSP00000509426.1
 
Nonsense mediated decay
A0A8I5KUM4 --
ENST00000646534.1SPTLC1-2122982144aaENSP00000495388.1
 
Nonsense mediated decay
A0A2R8Y6A2 --
ENST00000690139.1SPTLC1-2222892143aaENSP00000510483.1
 
Nonsense mediated decay
CCDS6693O15269-2 --
ENST00000644140.1SPTLC1-2102792143aaENSP00000493933.1
 
Nonsense mediated decay
A0A2R8Y4S0 --
ENST00000642671.1SPTLC1-208228922aaENSP00000495764.1
 
Nonsense mediated decay
A0A2R8Y763 -CDS 5' incomplete
ENST00000643599.1SPTLC1-209204222aaENSP00000494770.1
 
Nonsense mediated decay
A0A2R8Y763 -CDS 5' incomplete
ENST00000646481.1SPTLC1-211172722aaENSP00000496627.1
 
Nonsense mediated decay
A0A2R8Y763 -CDS 5' incomplete
ENST00000689423.1SPTLC1-220172142aaENSP00000508519.1
 
Nonsense mediated decay
A0A8I5QJP4 --
ENST00000693147.1SPTLC1-225151142aaENSP00000510358.1
 
Nonsense mediated decay
A0A8I5QJP4 --
ENST00000488921.6SPTLC1-207131142aaENSP00000510034.1
 
Nonsense mediated decay
A0A8I5QJP4 -TSL:3
ENST00000690095.1SPTLC1-2213132No protein-
 
Protein coding CDS not defined
---
ENST00000686799.1SPTLC1-2143043No protein-
 
Protein coding CDS not defined
---
ENST00000689261.1SPTLC1-2182651No protein-
 
Protein coding CDS not defined
---
ENST00000469778.1SPTLC1-204490No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000477888.1SPTLC1-205359No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000692458.1SPTLC1-2242810No protein-
 
Retained intron
---
ENST00000482632.6SPTLC1-2061738No protein-
 
Retained intron
--TSL:5
Statistics

Exons: 17, Coding exons: 2, Transcript length: 2,289 bps, Translation length: 22 residues

Incomplete CDS

CDS 5' incomplete

Version

ENST00000642671.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]