Human (GRCh38.p14)
Description

VPS35 retromer complex component [Source:HGNC Symbol;Acc:HGNC:13487]

Gene Synonyms

FLJ10752, MEM3, PARK17

Location
About this transcript

This transcript has 17 exons, is annotated with 33 domains and features, is associated with 13492 variant alleles and maps to 897 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000299138.12VPS35-2016776796aaENSP00000299138.7
 
Protein coding
CCDS10721Q96QK1 NM_018206.6MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000647959.1VPS35-211505447aaENSP00000497702.1
 
Nonsense mediated decay
A0A3B3ITD4 --
ENST00000568784.6VPS35-209401748aaENSP00000456274.2
 
Nonsense mediated decay
H3BRJ7 -TSL:1
ENST00000568612.5VPS35-20769741aaENSP00000461469.1
 
Nonsense mediated decay
I3L4S0 -TSL:5
ENST00000568642.5VPS35-208447No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000569950.1VPS35-2101096No protein-
 
Retained intron
--TSL:5
ENST00000563984.1VPS35-204775No protein-
 
Retained intron
--TSL:2
ENST00000563884.1VPS35-203759No protein-
 
Retained intron
--TSL:2
ENST00000562420.1VPS35-202740No protein-
 
Retained intron
--TSL:2
ENST00000568191.1VPS35-206520No protein-
 
Retained intron
--TSL:4
ENST00000565228.1VPS35-205487No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 17, Coding exons: 17, Transcript length: 6,776 bps, Translation length: 796 residues

MANE

This MANE Select transcript contains ENSP00000299138 and matches to NM_018206.6 and NP_060676.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96QK1

CCDS

This transcript is a member of the Human CCDS set: CCDS10721

Transcript Support Level (TSL)

TSL:1

Version

ENST00000299138.12

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.