Human (GRCh38.p14)
Description

LIM domain only 3 [Source:HGNC Symbol;Acc:HGNC:6643]

Gene Synonyms

DAT1, RBTNL2, RHOM-3

Location
About this transcript

This transcript has 5 exons, is annotated with 15 domains and features, is associated with 24564 variant alleles and maps to 568 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000537304.6LMO3-2153393145aaENSP00000440099.1
 
Protein coding
CCDS8678Q8TAP4-1 NM_018640.5MANE SelectEnsembl CanonicalGENCODE basicAPPRIS ALT1TSL:1
ENST00000261169.10LMO3-2013810156aaENSP00000261169.6
 
Protein coding
CCDS58211Q8TAP4-3 -GENCODE basicAPPRIS P4TSL:1
ENST00000320122.10LMO3-2023759145aaENSP00000312856.6
 
Protein coding
CCDS8678Q8TAP4-1 -GENCODE basicAPPRIS ALT1TSL:1
ENST00000354662.5LMO3-2043574145aaENSP00000346689.1
 
Protein coding
CCDS8678Q8TAP4-1 -GENCODE basicAPPRIS ALT1TSL:2
ENST00000441439.6LMO3-2083515145aaENSP00000412479.2
 
Protein coding
CCDS8678Q8TAP4-1 -GENCODE basicAPPRIS ALT1TSL:1
ENST00000541295.5LMO3-2253498163aaENSP00000446463.1
 
Protein coding
CCDS58212Q8TAP4-4 -GENCODE basicTSL:2
ENST00000447609.5LMO3-2093365145aaENSP00000413703.1
 
Protein coding
CCDS8678Q8TAP4-1 -GENCODE basicAPPRIS ALT1TSL:1
ENST00000540848.5LMO3-2241574145aaENSP00000445751.1
 
Protein coding
CCDS8678Q8TAP4-1 -GENCODE basicAPPRIS ALT1TSL:5
ENST00000535535.5LMO3-2121488145aaENSP00000446115.1
 
Protein coding
CCDS8678Q8TAP4-1 -GENCODE basicAPPRIS ALT1TSL:2
ENST00000534946.5LMO3-2111016145aaENSP00000439275.1
 
Protein coding
CCDS8678Q8TAP4-1 -GENCODE basicAPPRIS ALT1TSL:5
ENST00000540445.5LMO3-222906167aaENSP00000442786.1
 
Protein coding
CCDS58210Q8TAP4-2 -GENCODE basicTSL:2
ENST00000538020.1LMO3-21862258aaENSP00000446095.1
 
Protein coding
F5H4K9 -TSL:4CDS 3' incomplete
ENST00000546279.5LMO3-233590110aaENSP00000441360.1
 
Protein coding
F5GYZ6 -TSL:4CDS 3' incomplete
ENST00000538051.5LMO3-21957997aaENSP00000445504.1
 
Protein coding
F5H2N9 -TSL:2CDS 3' incomplete
ENST00000541846.5LMO3-228573145aaENSP00000444393.1
 
Protein coding
CCDS8678Q8TAP4-1 -GENCODE basicAPPRIS ALT1TSL:4
ENST00000540590.1LMO3-22356584aaENSP00000439989.1
 
Protein coding
F5H4T0 -TSL:4CDS 3' incomplete
ENST00000539534.5LMO3-221543118aaENSP00000443807.1
 
Protein coding
F5H3S4 -TSL:4CDS 3' incomplete
ENST00000545436.5LMO3-23253088aaENSP00000444269.1
 
Protein coding
F5GZR3 -TSL:4CDS 3' incomplete
ENST00000537757.5LMO3-217516118aaENSP00000445193.1
 
Protein coding
F5H3S4 -TSL:4CDS 3' incomplete
ENST00000546281.5LMO3-234496118aaENSP00000442713.1
 
Protein coding
F5H3S4 -TSL:4CDS 3' incomplete
ENST00000396205.6LMO3-205353469aaENSP00000379508.2
 
Nonsense mediated decay
F6TDU8 -TSL:5
ENST00000453727.6LMO3-210240360aaENSP00000404386.2
 
Nonsense mediated decay
Q05D86 -TSL:5
ENST00000541589.5LMO3-226149960aaENSP00000440948.1
 
Nonsense mediated decay
Q05D86 -TSL:2
ENST00000541764.5LMO3-227148992aaENSP00000437890.1
 
Nonsense mediated decay
F5H655 -TSL:1
ENST00000424192.6LMO3-20698370aaENSP00000404656.2
 
Nonsense mediated decay
C9JE61 -TSL:1
ENST00000536172.5LMO3-21358760aaENSP00000440885.1
 
Nonsense mediated decay
Q05D86 -TSL:3
ENST00000539232.1LMO3-22058060aaENSP00000438187.1
 
Nonsense mediated decay
Q05D86 -TSL:5
ENST00000544754.1LMO3-23155569aaENSP00000439900.1
 
Nonsense mediated decay
F6TDU8 -TSL:4
ENST00000537568.1LMO3-216594No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000536509.5LMO3-214550No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000332914.10LMO3-203549No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000544276.1LMO3-230460No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000543721.1LMO3-2293626No protein-
 
Retained intron
--TSL:2
ENST00000439600.2LMO3-2071044No protein-
 
Retained intron
--TSL:2
Statistics

Exons: 5, Coding exons: 3, Transcript length: 3,365 bps, Translation length: 145 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8TAP4

CCDS

This transcript is a member of the Human CCDS set: CCDS8678

Transcript Support Level (TSL)

TSL:1

Version

ENST00000447609.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.