Human (GRCh38.p14)
Description

VPS50 subunit of EARP/GARPII complex [Source:HGNC Symbol;Acc:HGNC:25956]

Gene Synonyms

CCDC132, DKFZP313I2429, FLJ20097, KIAA1861, VPS54L

Location
About this transcript

This transcript has 8 exons, is annotated with 6 domains and features, is associated with 9971 variant alleles and maps to 239 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000305866.10VPS50-2025684964aaENSP00000307666.5
 
Protein coding
CCDS43617Q96JG6-1 NM_017667.4MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000544910.5VPS50-2205736934aaENSP00000443104.1
 
Protein coding
CCDS59065Q96JG6-3 -GENCODE basicTSL:2
ENST00000458707.1VPS50-2081898469aaENSP00000414450.1
 
Protein coding
H0Y7Q2 -TSL:2CDS 5' incomplete
ENST00000251739.9VPS50-2011193327aaENSP00000251739.5
 
Protein coding
CCDS5630Q96JG6-2 -GENCODE basicTSL:1
ENST00000458530.1VPS50-207667189aaENSP00000405553.1
 
Protein coding
C9JA29 -TSL:4CDS 3' incomplete
ENST00000443443.1VPS50-206554155aaENSP00000390584.1
 
Protein coding
H7BZP1 -TSL:2CDS 5' incomplete
ENST00000649152.1VPS50-221555659aaENSP00000496891.1
 
Nonsense mediated decay
A0A3B3IRQ5 --
ENST00000441602.5VPS50-205347439aaENSP00000415809.1
 
Nonsense mediated decay
F2Z3F0 -TSL:1
ENST00000436177.5VPS50-20360339aaENSP00000406787.1
 
Nonsense mediated decay
F2Z3F0 -TSL:4
ENST00000438395.5VPS50-20453837aaENSP00000395433.1
 
Nonsense mediated decay
F8WDT1 -TSL:3
ENST00000474412.1VPS50-211819No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000467326.5VPS50-209574No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000477572.1VPS50-213504No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000471188.5VPS50-2103254No protein-
 
Retained intron
--TSL:1
ENST00000495039.1VPS50-2191115No protein-
 
Retained intron
--TSL:1
ENST00000480943.5VPS50-215801No protein-
 
Retained intron
--TSL:5
ENST00000477935.1VPS50-214760No protein-
 
Retained intron
--TSL:2
ENST00000484954.1VPS50-216594No protein-
 
Retained intron
--TSL:4
ENST00000485994.5VPS50-218573No protein-
 
Retained intron
--TSL:2
ENST00000485140.1VPS50-217558No protein-
 
Retained intron
--TSL:4
ENST00000476413.1VPS50-212381No protein-
 
Retained intron
--TSL:5
Statistics

Exons: 8, Coding exons: 8, Transcript length: 667 bps, Translation length: 189 residues

Transcript Support Level (TSL)

TSL:4

Incomplete CDS

CDS 3' incomplete

Version

ENST00000458530.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.