Human (GRCh38.p14)
Description

VPS50 subunit of EARP/GARPII complex [Source:HGNC Symbol;Acc:HGNC:25956]

Gene Synonyms

CCDC132, DKFZP313I2429, FLJ20097, KIAA1861, VPS54L

Location
About this transcript

This transcript has 28 exons, is annotated with 13 domains and features, is associated with 50349 variant alleles and maps to 883 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000305866.10VPS50-2025684964aaENSP00000307666.5
 
Protein coding
CCDS43617Q96JG6-1 NM_017667.4MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000544910.5VPS50-2205736934aaENSP00000443104.1
 
Protein coding
CCDS59065Q96JG6-3 -GENCODE basicTSL:2
ENST00000458707.1VPS50-2081898469aaENSP00000414450.1
 
Protein coding
H0Y7Q2 -TSL:2CDS 5' incomplete
ENST00000251739.9VPS50-2011193327aaENSP00000251739.5
 
Protein coding
CCDS5630Q96JG6-2 -GENCODE basicTSL:1
ENST00000458530.1VPS50-207667189aaENSP00000405553.1
 
Protein coding
C9JA29 -TSL:4CDS 3' incomplete
ENST00000443443.1VPS50-206554155aaENSP00000390584.1
 
Protein coding
H7BZP1 -TSL:2CDS 5' incomplete
ENST00000649152.1VPS50-221555659aaENSP00000496891.1
 
Nonsense mediated decay
A0A3B3IRQ5 --
ENST00000441602.5VPS50-205347439aaENSP00000415809.1
 
Nonsense mediated decay
F2Z3F0 -TSL:1
ENST00000436177.5VPS50-20360339aaENSP00000406787.1
 
Nonsense mediated decay
F2Z3F0 -TSL:4
ENST00000438395.5VPS50-20453837aaENSP00000395433.1
 
Nonsense mediated decay
F8WDT1 -TSL:3
ENST00000474412.1VPS50-211819No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000467326.5VPS50-209574No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000477572.1VPS50-213504No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000471188.5VPS50-2103254No protein-
 
Retained intron
--TSL:1
ENST00000495039.1VPS50-2191115No protein-
 
Retained intron
--TSL:1
ENST00000480943.5VPS50-215801No protein-
 
Retained intron
--TSL:5
ENST00000477935.1VPS50-214760No protein-
 
Retained intron
--TSL:2
ENST00000484954.1VPS50-216594No protein-
 
Retained intron
--TSL:4
ENST00000485994.5VPS50-218573No protein-
 
Retained intron
--TSL:2
ENST00000485140.1VPS50-217558No protein-
 
Retained intron
--TSL:4
ENST00000476413.1VPS50-212381No protein-
 
Retained intron
--TSL:5
Statistics

Exons: 28, Coding exons: 28, Transcript length: 5,684 bps, Translation length: 964 residues

MANE

This MANE Select transcript contains ENSP00000307666 and matches to NM_017667.4 and NP_060137.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96JG6

CCDS

This transcript is a member of the Human CCDS set: CCDS43617

Transcript Support Level (TSL)

TSL:1

Version

ENST00000305866.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.