Human (GRCh38.p14)
Description

VPS50 subunit of EARP/GARPII complex [Source:HGNC Symbol;Acc:HGNC:25956]

Gene Synonyms

CCDC132, DKFZP313I2429, FLJ20097, KIAA1861, VPS54L

Location
About this transcript

This transcript has 20 exons, is associated with 39726 variant alleles and maps to 698 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000305866.10VPS50-2025684964aaENSP00000307666.5
 
Protein coding
CCDS43617Q96JG6-1 NM_017667.4MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000544910.5VPS50-2205736934aaENSP00000443104.1
 
Protein coding
CCDS59065Q96JG6-3 -GENCODE basicTSL:2
ENST00000458707.1VPS50-2081898469aaENSP00000414450.1
 
Protein coding
H0Y7Q2 -TSL:2CDS 5' incomplete
ENST00000251739.9VPS50-2011193327aaENSP00000251739.5
 
Protein coding
CCDS5630Q96JG6-2 -GENCODE basicTSL:1
ENST00000458530.1VPS50-207667189aaENSP00000405553.1
 
Protein coding
C9JA29 -TSL:4CDS 3' incomplete
ENST00000443443.1VPS50-206554155aaENSP00000390584.1
 
Protein coding
H7BZP1 -TSL:2CDS 5' incomplete
ENST00000649152.1VPS50-221555659aaENSP00000496891.1
 
Nonsense mediated decay
A0A3B3IRQ5 --
ENST00000441602.5VPS50-205347439aaENSP00000415809.1
 
Nonsense mediated decay
F2Z3F0 -TSL:1
ENST00000436177.5VPS50-20360339aaENSP00000406787.1
 
Nonsense mediated decay
F2Z3F0 -TSL:4
ENST00000438395.5VPS50-20453837aaENSP00000395433.1
 
Nonsense mediated decay
F8WDT1 -TSL:3
ENST00000474412.1VPS50-211819No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000467326.5VPS50-209574No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000477572.1VPS50-213504No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000471188.5VPS50-2103254No protein-
 
Retained intron
--TSL:1
ENST00000495039.1VPS50-2191115No protein-
 
Retained intron
--TSL:1
ENST00000480943.5VPS50-215801No protein-
 
Retained intron
--TSL:5
ENST00000477935.1VPS50-214760No protein-
 
Retained intron
--TSL:2
ENST00000484954.1VPS50-216594No protein-
 
Retained intron
--TSL:4
ENST00000485994.5VPS50-218573No protein-
 
Retained intron
--TSL:2
ENST00000485140.1VPS50-217558No protein-
 
Retained intron
--TSL:4
ENST00000476413.1VPS50-212381No protein-
 
Retained intron
--TSL:5
Statistics

Exons: 20, Coding exons: 0, Transcript length: 3,254 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000471188.5

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.