Transcript: ENST00000672180.1 CLSTN3-220

Description

calsyntenin 3 [Source:HGNC Symbol;Acc:HGNC:18371]

Gene Synonyms

CDHR14, CSTN3, KIAA0726

Location

Scaffold HG1398_PATCH: 60,072-86,618 forward strand.

About this transcript

This transcript has 17 exons, is associated with 16353 variant alleles and maps to 482 oligo probes.

Gene

This transcript is a product of gene ENSG00000288427.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq Match	Flags
ENST00000672495.1	CLSTN3-222	4013	956aa	ENSP00000500510.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9BQT9-1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000673486.1	CLSTN3-231	2288	355aa	ENSP00000500657.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000673375.1	CLSTN3-230	1630	364aa	ENSP00000500213.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9BQT9-3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000672644.1	CLSTN3-224	570	134aa	ENSP00000500349.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000671973.1	CLSTN3-218	570	176aa	ENSP00000500105.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000673190.1	CLSTN3-229	547	154aa	ENSP00000500680.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000673552.1	CLSTN3-232	533	142aa	ENSP00000500913.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000671934.1	CLSTN3-217	533	129aa	ENSP00000500879.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000672848.1	CLSTN3-225	671	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000673065.1	CLSTN3-227	566	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000671988.1	CLSTN3-219	546	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000672180.1	CLSTN3-220	4296	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000673036.1	CLSTN3-226	910	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000673180.1	CLSTN3-228	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000672361.1	CLSTN3-221	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000672507.1	CLSTN3-223	390	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 17, Coding exons: 0, Transcript length: 4,296 bps,

Version

ENST00000672180.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project, projected to the alternate locus via a mapping from the primary assembly.

Transcript: ENST00000672180.1 CLSTN3-220

Summary

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Transcript: ENST00000672180.1 CLSTN3-220

Summary

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