Transcript: ENST00000638766.1 LGALS9C-218

Description

galectin 9C [Source:HGNC Symbol;Acc:HGNC:33874]

Location

Scaffold HSCHR17_3_CTG1: 246,775-264,917 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 17 domains and features, is associated with 10906 variant alleles and maps to 645 oligo probes.

Gene

This transcript is a product of gene ENSG00000284021.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq Match	Flags
ENST00000639265.2	LGALS9C-222	1715	356aa	ENSP00000491587.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DKI2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000638766.1	LGALS9C-218	1602	323aa	ENSP00000492141.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J3KSY2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000640841.1	LGALS9C-230	1378	246aa	ENSP00000492382.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J3QR96	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000640474.1	LGALS9C-227	1104	234aa	ENSP00000491939.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J3KT17	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000640466.1	LGALS9C-226	615	175aa	ENSP00000492402.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J3QSH0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000640023.1	LGALS9C-224	1515	75aa	ENSP00000492784.1	Nonsense mediated decay	J3KRF0	-	-
ENST00000640356.1	LGALS9C-225	1506	75aa	ENSP00000491799.1	Nonsense mediated decay	J3KRF0	-	-
ENST00000640645.1	LGALS9C-229	1117	35aa	ENSP00000491309.1	Nonsense mediated decay	J3QKS2	-	-
ENST00000638896.1	LGALS9C-219	381	53aa	ENSP00000491219.1	Nonsense mediated decay	J3KSV0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000639415.1	LGALS9C-223	447	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000638447.1	LGALS9C-216	2947	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000639218.1	LGALS9C-221	2354	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000638740.1	LGALS9C-217	555	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000640535.1	LGALS9C-228	549	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000639050.1	LGALS9C-220	492	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,602 bps, Translation length: 323 residues

Version

ENST00000638766.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000638766.1 LGALS9C-218

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Transcript: ENST00000638766.1 LGALS9C-218

Summary

About Us

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