Transcript: ENSDART00000171528.2 hnrnpl2-205

Description

heterogeneous nuclear ribonucleoprotein L2 [Source:ZFIN;Acc:ZDB-GENE-040426-2707]

Gene Synonyms

fb53f10, fp61c04, hnrnpl, hnrpl, wu:fb53f10, wu:fp61c04, zgc:66175

Location

Chromosome 15: 5,784,212-5,799,183 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 26 domains and features, is associated with 472 variant alleles and maps to 272 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000059303.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000142334.3	hnrnpl2-202	1592	522aa	ENSDARP00000115723.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8KC22	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000171528.2	hnrnpl2-205	2064	499aa	ENSDARP00000139075.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IVC0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000158612.2	hnrnpl2-204	829	56aa	ENSDARP00000133656.1	Nonsense mediated decay	A0A0R4IJ21	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000135442.3	hnrnpl2-201	789	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000146815.2	hnrnpl2-203	636	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 2,064 bps, Translation length: 499 residues

Version

ENSDART00000171528.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000171528.2 hnrnpl2-205

Summary

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Transcript: ENSDART00000171528.2 hnrnpl2-205

Summary

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