Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ablim3 ENSDARG00000088168

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Description

actin binding LIM protein family, member 3 [Source:ZFIN;Acc:ZDB-GENE-070112-1122]

Gene Synonyms

fb51g06, im:7152284, si:dkey-23o10.3, wu:fb51g06, zgc:158673, zgc:198293

Location

Chromosome 14: 34,634,145-34,771,864 reverse strand.

GRCz11:CM002898.2

About this gene

This gene has 7 transcripts (splice variants), 247 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000160598.2	ablim3-206	2055	684aa	ENSDARP00000140642.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IXJ5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000141157.5	ablim3-202	3959	683aa	ENSDARP00000116596.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1L269	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000168910.3	ablim3-207	2128	631aa	ENSDARP00000141374.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7ZVF6	-
ENSDART00000150413.3	ablim3-205	1899	632aa	ENSDARP00000125317.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H0WEN9	-
ENSDART00000150358.2	ablim3-204	865	288aa	ENSDARP00000125529.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H0WF98	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000134249.2	ablim3-201	606	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000147084.2	ablim3-203	581	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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