Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: shmt1 ENSDARG00000052816

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Description

serine hydroxymethyltransferase 1 (soluble) [Source:ZFIN;Acc:ZDB-GENE-040426-1558]

Gene Synonyms

zSHMT-1, zgc:66171, zgc:77524

Location

Chromosome 3: 40,260,929-40,276,071 reverse strand.

GRCz11:CM002887.2

About this gene

This gene has 3 transcripts (splice variants), 215 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000074737.6	shmt1-201	1858	481aa	ENSDARP00000069223.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NYR0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000141578.3	shmt1-203	794	248aa	ENSDARP00000123687.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QBE1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000132225.2	shmt1-202	759	235aa	ENSDARP00000121832.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QEK5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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