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EnsemblEnsembl Home

Find a Species

The main Ensembl site focuses on vertebrate genomes - scroll down for links to our sister sites covering invertebrates, plants, bacteria, etc.

Favourite genomes

Mus musculus Mouse
GRCm38.p6
Danio rerio Zebrafish
GRCz11

Available genomes

Note: to find out which species were in previous releases, please see the table of assemblies

Common nameScientific nameTaxon IDEnsembl AssemblyAccessionGenebuild MethodVariation databaseRegulation database
Algerian mouseAlgerian mouseMus spretus10096SPRET_EiJ_v1GCA_001624865.1External annotation import-Y
AlpacaAlpacaVicugna pacos30538vicPac1-Projection build--
Amazon mollyAmazon mollyPoecilia formosa48698Poecilia_formosa-5.1.2GCA_000485575.1Full genebuild--
Angola colobusAngola colobusColobus angolensis palliatus336983Cang.pa_1.0GCA_000951035.1Full genebuild-Y
Anole lizardAnole lizardAnolis carolinensis28377AnoCar2.0GCA_000090745.1Full genebuild--
ArmadilloArmadilloDasypus novemcinctus9361Dasnov3.0GCA_000208655.2Mixed strategy build--
Asian bonytongueAsian bonytongueScleropages formosus113540ASM162426v1GCA_001624265.1Full genebuild--
Ballan wrasseBallan wrasseLabrus bergylta56723BallGen_V1GCA_900080235.1Full genebuild--
Bicolor damselfishBicolor damselfishStegastes partitus144197Stegastes_partitus-1.0.2GCA_000690725.1Full genebuild--
Big-finned mudskipperBig-finned mudskipperPeriophthalmus magnuspinnatus409849PM.faGCA_000787105.1Full genebuild--
Black snub-nosed monkeyBlack snub-nosed monkeyRhinopithecus bieti61621ASM169854v1GCA_001698545.1Full genebuild-Y
Bolivian squirrel monkeyBolivian squirrel monkeySaimiri boliviensis boliviensis39432SaiBol1.0GCA_000235385.1Full genebuild-Y
BonoboBonoboPan paniscus9597panpan1.1GCA_000258655.2Full genebuild-Y
Brazilian guinea pigBrazilian guinea pigCavia aperea37548CavAp1.0GCA_000688575.1Full genebuild--
Burton's mouthbrooderBurton's mouthbrooderHaplochromis burtoni8153AstBur1.0GCA_000239415.1Full genebuild--
BushbabyBushbabyOtolemur garnettii30611OtoGar3GCA_000181295.3Full genebuild--
C.intestinalisC.intestinalisCiona intestinalis7719KHGCA_000224145.1Full genebuild-Y
C.savignyiC.savignyiCiona savignyi51511CSAV 2.0-Full genebuild--
C. elegansC. elegansCaenorhabditis elegans6239WBcel235GCA_000002985.3Import-Y
CapuchinCapuchinCebus capucinus imitator1737458Cebus_imitator-1.0GCA_001604975.1Full genebuild-Y
CatCatFelis catus9685Felis_catus_9.0GCA_000181335.4Full genebuildYY
Cave fishCave fishAstyanax mexicanus7994Astyanax_mexicanus-2.0GCA_000372685.2Full genebuild--
Channel catfishChannel catfishIctalurus punctatus7998IpCoco_1.2GCA_001660625.1Full genebuild--
ChickenChickenGallus gallus9031Gallus_gallus-5.0GCA_000002315.3Full genebuildYY
ChimpanzeeChimpanzeePan troglodytes9598Pan_tro_3.0GCA_000001515.5Full genebuildYY
Chinese hamster CHOK1GSChinese hamster CHOK1GSCricetulus griseus10029CHOK1GS_HDv1GCA_900186095.1Full genebuild-Y
Chinese hamster CriGriChinese hamster CriGriCricetulus griseus10029CriGri_1.0GCA_000223135.1Full genebuild-Y
Chinese softshell turtleChinese softshell turtlePelodiscus sinensis13735PelSin_1.0GCA_000230535.1Mixed strategy build--
Climbing perchClimbing perchAnabas testudineus64144fAnaTes1.1GCA_900324465.1Full genebuild--
Clown anemonefishClown anemonefishAmphiprion ocellaris80972AmpOce1.0GCA_002776465.1Full genebuild--
CodCodGadus morhua8049gadMor1-Mixed strategy build--
CoelacanthCoelacanthLatimeria chalumnae7897LatCha1GCA_000225785.1Full genebuild--
Coquerel's sifakaCoquerel's sifakaPropithecus coquereli379532Pcoq_1.0GCA_000956105.1Full genebuild-Y
CowCowBos taurus9913UMD3.1GCA_000003055.3Full genebuildYY
Crab-eating macaqueCrab-eating macaqueMacaca fascicularis9541Macaca_fascicularis_5.0GCA_000364345.1Full genebuild-Y
Damara mole ratDamara mole ratFukomys damarensis885580DMR_v1.0GCA_000743615.1Full genebuild--
DeguDeguOctodon degus10160OctDeg1.0GCA_000260255.1Full genebuild--
DogDogCanis lupus familiaris9615CanFam3.1GCA_000002285.2Full genebuildYY
DolphinDolphinTursiops truncatus9739turTru1-Projection build--
DrillDrillMandrillus leucophaeus9568Mleu.le_1.0GCA_000951045.1Full genebuild-Y
DuckDuckAnas platyrhynchos8839BGI_duck_1.0GCA_000355885.1Full genebuild--
Eastern happyEastern happyAstatotilapia calliptera8154fAstCal1.2GCA_900246225.3Full genebuild--
ElephantElephantLoxodonta africana9785Loxafr3.0GCA_000001905.1Full genebuild--
FerretFerretMustela putorius furo9669MusPutFur1.0GCA_000215625.1Mixed strategy build--
FlycatcherFlycatcherFicedula albicollis59894FicAlb_1.4GCA_000247815.1Full genebuild--
FruitflyFruitflyDrosophila melanogaster7227BDGP6GCA_000001215.4ImportYY
FuguFuguTakifugu rubripes31033FUGU5GCA_000180615.2Full genebuild--
GibbonGibbonNomascus leucogenys61853Nleu_3.0GCA_000146795.3Full genebuildYY
GoatGoatCapra hircus9925ARS1GCA_001704415.1Full genebuildYY
Golden HamsterGolden HamsterMesocricetus auratus10036MesAur1.0GCA_000349665.1Full genebuild-Y
Golden snub-nosed monkeyGolden snub-nosed monkeyRhinopithecus roxellana61622Rrox_v1GCA_000769185.1Full genebuild-Y
GorillaGorillaGorilla gorilla gorilla9595gorGor4GCA_000151905.3Full genebuild-Y
Greater amberjackGreater amberjackSeriola dumerili41447Sdu_1.0GCA_002260705.1Full genebuild--
Guinea PigGuinea PigCavia porcellus10141Cavpor3.0GCA_000151735.1Full genebuild-Y
GuppyGuppyPoecilia reticulata8081Guppy_female_1.0_MTGCA_000633615.2Full genebuild--
HagfishHagfishEptatretus burgeri7764Eburgeri_3.2GCA_900186335.2Full genebuild--
HedgehogHedgehogErinaceus europaeus9365eriEur1-Projection build--
HorseHorseEquus caballus9796Equ Cab 2GCA_000002305.1Full genebuildY-
HumanHumanHomo sapiens9606GRCh38.p12GCA_000001405.27Full genebuildYY
HyraxHyraxProcavia capensis9813proCap1-Projection build--
Indian medakaIndian medakaOryzias melastigma30732Om_v0.7.RACAGCA_002922805.1Full genebuild--
Japanese Medaka HNIJapanese Medaka HNIOryzias latipes8090ASM223471v1GCA_002234715.1Full genebuild--
Japanese Medaka HSOKJapanese Medaka HSOKOryzias latipes8090ASM223469v1GCA_002234695.1Full genebuild--
Japanese Medaka HdrRJapanese Medaka HdrROryzias latipes8090ASM223467v1GCA_002234675.1Full genebuild--
Kangaroo ratKangaroo ratDipodomys ordii10020Dord_2.0GCA_000151885.2Full genebuild--
LampreyLampreyPetromyzon marinus7757Pmarinus_7.0-Full genebuild--
LeopardLeopardPanthera pardus9691PanPar1.0GCA_001857705.1Full genebuild--
Lesser Egyptian jerboaLesser Egyptian jerboaJaculus jaculus51337JacJac1.0GCA_000280705.1Full genebuild--
Lesser hedgehog tenrecLesser hedgehog tenrecEchinops telfairi9371TENREC-Projection build--
Long-tailed chinchillaLong-tailed chinchillaChinchilla lanigera34839ChiLan1.0GCA_000276665.1Full genebuild--
Lyretail cichlidLyretail cichlidNeolamprologus brichardi32507NeoBri1.0GCA_000239395.1Full genebuild--
Ma's night monkeyMa's night monkeyAotus nancymaae37293Anan_2.0GCA_000952055.2Full genebuild-Y
MacaqueMacaqueMacaca mulatta9544Mmul_8.0.1GCA_000772875.3Full genebuildYY
Mangrove rivulusMangrove rivulusKryptolebias marmoratus37003ASM164957v1GCA_001649575.1Full genebuild--
MarmosetMarmosetCallithrix jacchus9483ASM275486v1GCA_002754865.1Full genebuild-Y
MegabatMegabatPteropus vampyrus132908pteVam1-Projection build--
MicrobatMicrobatMyotis lucifugus59463Myoluc2.0GCA_000147115.1Full genebuild--
Midas cichlidMidas cichlidAmphilophus citrinellus61819Midas_v5GCA_000751415.1Full genebuild--
Monterrey platyfishMonterrey platyfishXiphophorus couchianus32473Xiphophorus_couchianus-4.0.1GCA_001444195.1Full genebuild--
MouseMouseMus musculus10090GRCm38.p6GCA_000001635.8Full genebuildYY
Mouse 129S1/SvImJMouse 129S1/SvImJMus musculus10090129S1_SvImJ_v1GCA_001624185.1External annotation import-Y
Mouse A/JMouse A/JMus musculus10090A_J_v1GCA_001624215.1External annotation import-Y
Mouse AKR/JMouse AKR/JMus musculus10090AKR_J_v1GCA_001624295.1External annotation import-Y
Mouse BALB/cJMouse BALB/cJMus musculus10090BALB_cJ_v1GCA_001632525.1External annotation import-Y
Mouse C3H/HeJMouse C3H/HeJMus musculus10090C3H_HeJ_v1GCA_001632575.1External annotation import-Y
Mouse C57BL/6NJMouse C57BL/6NJMus musculus10090C57BL_6NJ_v1GCA_001632555.1External annotation import-Y
Mouse CAST/EiJMouse CAST/EiJMus musculus castaneus10091CAST_EiJ_v1GCA_001624445.1External annotation import-Y
Mouse CBA/JMouse CBA/JMus musculus10090CBA_J_v1GCA_001624475.1External annotation import-Y
Mouse DBA/2JMouse DBA/2JMus musculus10090DBA_2J_v1GCA_001624505.1External annotation import-Y
Mouse FVB/NJMouse FVB/NJMus musculus10090FVB_NJ_v1GCA_001624535.1External annotation import-Y
Mouse LP/JMouse LP/JMus musculus10090LP_J_v1GCA_001632615.1External annotation import-Y
Mouse LemurMouse LemurMicrocebus murinus30608Mmur_3.0GCA_000165445.3Full genebuild-Y
Mouse NOD/ShiLtJMouse NOD/ShiLtJMus musculus10090NOD_ShiLtJ_v1GCA_001624675.1External annotation import-Y
Mouse NZO/HlLtJMouse NZO/HlLtJMus musculus10090NZO_HlLtJ_v1GCA_001624745.1External annotation import-Y
Mouse PWK/PhJMouse PWK/PhJMus musculus musculus39442PWK_PhJ_v1GCA_001624775.1External annotation import-Y
Mouse WSB/EiJMouse WSB/EiJMus musculus domesticus10092WSB_EiJ_v1GCA_001624835.1External annotation import-Y
MummichogMummichogFundulus heteroclitus8078Fundulus_heteroclitus-3.0.2GCA_000826765.1Full genebuild--
Naked mole-rat femaleNaked mole-rat femaleHeterocephalus glaber10181HetGla_female_1.0GCA_000247695.1Full genebuild--
Naked mole-rat maleNaked mole-rat maleHeterocephalus glaber10181HetGla_1.0GCA_000230445.1Full genebuild--
Northern American deer mouseNorthern American deer mousePeromyscus maniculatus bairdii230844Pman_1.0GCA_000500345.1Full genebuild--
Northern pikeNorthern pikeEsox lucius8010Eluc_V3GCA_000721915.3Full genebuild--
Ocean sunfishOcean sunfishMola mola94237ASM169857v1GCA_001698575.1Full genebuild--
Olive baboonOlive baboonPapio anubis9555Panu_3.0GCA_000264685.2Full genebuild-Y
OpossumOpossumMonodelphis domestica13616monDom5GCF_000002295.2Full genebuildY-
Orange clownfishOrange clownfishAmphiprion percula161767Nemo_v1GCA_003047355.1Full genebuild--
OrangutanOrangutanPongo abelii9601PPYG2-Projection buildY-
PandaPandaAiluropoda melanoleuca9646ailMel1GCA_000004335.1Full genebuild--
P. kingsleyaeP. kingsleyaeParamormyrops kingsleyae1676925PKINGS_0.1GCA_002872115.1Full genebuild--
PigPigSus scrofa9823Sscrofa11.1GCA_000003025.6Full genebuildYY
Pig-tailed macaquePig-tailed macaqueMacaca nemestrina9545Mnem_1.0GCA_000956065.1Full genebuild-Y
PikaPikaOchotona princeps9978OchPri2.0-Ens-Projection build--
PlatyfishPlatyfishXiphophorus maculatus8083X_maculatus-5.0-maleGCA_002775205.2Full genebuild--
PlatypusPlatypusOrnithorhynchus anatinus9258OANA5GCF_000002275.2Full genebuildYY
Prairie volePrairie voleMicrotus ochrogaster79684MicOch1.0GCA_000317375.1Full genebuild--
P. nyerereiP. nyerereiPundamilia nyererei303518PunNye1.0GCA_000239375.1Full genebuild--
RabbitRabbitOryctolagus cuniculus9986OryCun2.0GCA_000003625.1Full genebuild-Y
RatRatRattus norvegicus10116Rnor_6.0GCA_000001895.4Mixed strategy buildYY
Red-bellied piranhaRed-bellied piranhaPygocentrus nattereri42514Pygocentrus_nattereri-1.0.2GCA_001682695.1Full genebuild--
Ryukyu mouseRyukyu mouseMus caroli10089CAROLI_EIJ_v1.1GCA_900094665.2External annotation import--
S. cerevisiaeS. cerevisiaeSaccharomyces cerevisiae4932R64-1-1GCA_000146045.2ImportYY
Sailfin mollySailfin mollyPoecilia latipinna48699P_latipinna-1.0GCA_001443285.1Full genebuild--
SheepSheepOvis aries9940Oar_v3.1GCA_000298735.1Mixed strategy buildY-
Sheepshead minnowSheepshead minnowCyprinodon variegatus28743C_variegatus-1.0GCA_000732505.1Full genebuild--
Shortfin mollyShortfin mollyPoecilia mexicana48701P_mexicana-1.0GCA_001443325.1Full genebuild--
ShrewShrewSorex araneus42254sorAra1-Projection build--
Shrew mouseShrew mouseMus pahari10093PAHARI_EIJ_v1.1GCA_900095145.2External annotation import--
SlothSlothCholoepus hoffmanni9358choHof1-Projection build--
Sooty mangabeySooty mangabeyCercocebus atys9531Caty_1.0GCA_000955945.1Full genebuild-Y
Spiny chromisSpiny chromisAcanthochromis polyacanthus80966ASM210954v1GCA_002109545.1Full genebuild--
Spotted garSpotted garLepisosteus oculatus7918LepOcu1GCA_000242695.1Full genebuild--
SquirrelSquirrelIctidomys tridecemlineatus43179SpeTri2.0GCA_000236235.1Full genebuild--
SticklebackSticklebackGasterosteus aculeatus69293BROAD S1-Full genebuild--
Swamp eelSwamp eelMonopterus albus43700M_albus_1.0GCA_001952655.1Full genebuild--
TarsierTarsierCarlito syrichta1868482Tarsius_syrichta-2.0.1GCA_000164805.2Full genebuild-Y
Tasmanian devilTasmanian devilSarcophilus harrisii9305Devil_ref v7.0GCA_000189315.1Mixed strategy build--
TetraodonTetraodonTetraodon nigroviridis99883TETRAODON 8.0-Full genebuildY-
TigerTigerPanthera tigris altaica74533PanTig1.0GCA_000464555.1Full genebuild--
Tiger tail seahorseTiger tail seahorseHippocampus comes109280H_comes_QL1_v1GCA_001891065.1Full genebuild--
TilapiaTilapiaOreochromis niloticus8128Orenil1.0GCA_000188235.1Mixed strategy build--
Tongue soleTongue soleCynoglossus semilaevis244447Cse_v1.0GCA_000523025.1Full genebuild--
Tree ShrewTree ShrewTupaia belangeri37347tupBel1-Projection build--
TurbotTurbotScophthalmus maximus52904ASM318616v1GCA_003186165.1Full genebuild--
TurkeyTurkeyMeleagris gallopavo9103Turkey_2.01GCA_000146605.1Full genebuildY-
Upper Galilee mountains blind mole ratUpper Galilee mountains blind mole ratNannospalax galili1026970S.galili_v1.0GCA_000622305.1Full genebuild-Y
Vervet-AGMVervet-AGMChlorocebus sabaeus60711ChlSab1.1GCA_000409795.2Full genebuild--
WallabyWallabyNotamacropus eugenii9315Meug_1.0GCA_000004035.1Projection build--
Western mosquitofishWestern mosquitofishGambusia affinis33528ASM309773v1GCA_003097735.1Full genebuild--
XenopusXenopusXenopus tropicalis8364JGI 4.2GCA_000004195.1Full genebuild-Y
Yellowtail amberjackYellowtail amberjackSeriola lalandi dorsalis1841481Sedor1GCA_002814215.1Full genebuild--
Zebra FinchZebra FinchTaeniopygia guttata59729taeGut3.2.4-Full genebuildY-
Zebra mbunaZebra mbunaMaylandia zebra106582M_zebra_UMD2aGCA_000238955.5Full genebuild--
ZebrafishZebrafishDanio rerio7955GRCz11GCA_000002035.4Full genebuildYY
Zig-zag eelZig-zag eelMastacembelus armatus205130fMasArm1.1GCA_900324485.1Full genebuild--

Credits page for species images

Other Metazoa

Additional metazoan genomes (initially insect vectors and nematodes) are available from EnsemblMetazoa

Plants and Fungi

Plant and fungal genomes can be found at EnsemblPlants and EnsemblFungi

Protists, Bacteria and Archaea

Unicellular eukaryotic and prokaryotic genomes can be found at EnsemblProtists and EnsemblBacteria respectively.