The Rrox_v1 assembly was submitted by Novogene on 2014/10/28 . The assembly is on the Scaffold level, consisting of 196,797 assembled into 135,512 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 77,151 while the scaffold N50 is 1,549,224.
The genome assembly represented here corresponds to GenBank Assembly ID GCA_000769185.1
The golden snub-nosed monkey (Rhinopithecus roxellana) is an Old World monkey in the Colobinae subfamily. It is endemic to a small area in temperate, mountainous forests of central and Southwest China. They inhabit these mountainous forests of Southwestern China at elevations of 1,500-3,400 m above sea level. The Chinese name is Sichuan golden hair monkey. It is also widely referred to as the Sichuan snub-nosed monkey. Of the three species of snub-nosed monkeys in China, the golden snub-nosed monkey is the most widely distributed throughout China.
The gene annotation process was carried out using a combination of protein-to-genome alignments, annotation mapping from a suitable reference species and RNA-seq alignments (where RNA-seq data with appropriate meta data were publicly available). For each candidate gene region, a selection process was applied to choose the most appropriate set of transcripts based on evolutionary distance, experimental evidence for the source data and quality of the alignments. Small ncRNAs were obtained using a combination of BLAST and Infernal/RNAfold. Pseudogenes were calculated by looking at genes with a large percentage of non-biological introns (introns of <10bp), where the gene was covered in repeats, or where the gene was single exon and evidence of a functional multi-exon paralog was found elsewhere in the genome.
In accordance with the Fort Lauderdale Agreement , please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.
General information about this species can be found in Wikipedia.
|Assembly||Rrox_v1, INSDC Assembly GCA_000769185.1, Oct 2014|
|Golden Path Length||2,899,552,139|
|Annotation method||Full genebuild|
|Genebuild started||Aug 2017|
|Genebuild released||Dec 2017|
|Genebuild last updated/patched||Jan 2018|
|Non coding genes||6,946|
|Small non coding genes||4,738|
|Long non coding genes||289|
|Misc non coding genes||1,919|
|Genscan gene predictions||53,261|