The Panu_3.0 assembly was submitted by Human Genome Sequencing Center on 2017/04/20 . The assembly is on the Chromosome level, consisting of 118,811 assembled into 71,135 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 149,817 while the scaffold N50 is 585,721.
The genome assembly represented here corresponds to GenBank Assembly ID GCA_000264685.2
The olive baboon (Papio anubis), also called the Anubis baboon, is a member of the family Cercopithecidae (Old World monkeys). The species is the most wide-ranging of all baboons, being found in 25 countries throughout Africa, extending from Mali eastward to Ethiopia and Tanzania. Isolated populations are also present in some mountainous regions of the Sahara. It inhabits savannahs, steppes, and forests. The common name is derived from its coat color, which is a shade of green-grey at a distance. A variety of communications, vocal and non-vocal, facilitate a complex social structure.
The gene annotation process was carried out using a combination of protein-to-genome alignments, annotation mapping from a suitable reference species and RNA-seq alignments (where RNA-seq data with appropriate meta data were publicly available). For each candidate gene region, a selection process was applied to choose the most appropriate set of transcripts based on evolutionary distance, experimental evidence for the source data and quality of the alignments. Small ncRNAs were obtained using a combination of BLAST and Infernal/RNAfold. Pseudogenes were calculated by looking at genes with a large percentage of non-biological introns (introns of <10bp), where the gene was covered in repeats, or where the gene was single exon and evidence of a functional multi-exon paralog was found elsewhere in the genome.
In accordance with the Fort Lauderdale Agreement , please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.
General information about this species can be found in Wikipedia.
|Assembly||Panu_3.0, INSDC Assembly GCA_000264685.2, Apr 2017|
|Golden Path Length||2,959,356,508|
|Annotation method||Full genebuild|
|Genebuild started||Aug 2017|
|Genebuild released||Dec 2017|
|Genebuild last updated/patched||Jan 2018|
|Non coding genes||7,406|
|Small non coding genes||4,686|
|Long non coding genes||714|
|Misc non coding genes||2,006|
|Genscan gene predictions||51,094|