The panpan1.1 assembly was submitted by Max-Planck Institute for Evolutionary Anthropology on 2015/08/18 . The assembly is on the Chromosome level, consisting of 121,356 assembled into 10,984 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 66,676 while the scaffold N50 is 8,197,324.
The genome assembly represented here corresponds to GenBank Assembly ID GCA_000258655.2
The bonobo (Pan paniscus), formerly called the pygmy chimpanzee and less often, the dwarf or gracile chimpanzee, is an endangered great ape and one of the two species making up the genus Pan; the other is Pan troglodytes, or the common chimpanzee. Although the name "chimpanzee" is sometimes used to refer to both species together, it is usually understood as referring to the common chimpanzee, whereas Pan paniscus is usually referred to as the bonobo.
The gene annotation process was carried out using a combination of protein-to-genome alignments, annotation mapping from a suitable reference species and RNA-seq alignments (where RNA-seq data with appropriate meta data were publicly available). For each candidate gene region, a selection process was applied to choose the most appropriate set of transcripts based on evolutionary distance, experimental evidence for the source data and quality of the alignments. Small ncRNAs were obtained using a combination of BLAST and Infernal/RNAfold. Pseudogenes were calculated by looking at genes with a large percentage of non-biological introns (introns of <10bp), where the gene was covered in repeats, or where the gene was single exon and evidence of a functional multi-exon paralog was found elsewhere in the genome.
In accordance with the Fort Lauderdale Agreement , please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.
General information about this species can be found in Wikipedia.
|Assembly||panpan1.1, INSDC Assembly GCA_000258655.2, Aug 2015|
|Golden Path Length||3,286,643,896|
|Annotation method||Full genebuild|
|Genebuild started||Aug 2017|
|Genebuild released||Dec 2017|
|Genebuild last updated/patched||Jan 2018|
|Non coding genes||8,499|
|Small non coding genes||4,998|
|Long non coding genes||1,497|
|Misc non coding genes||2,004|
|Genscan gene predictions||44,965|