The PAHARI_EIJ_v1.1 assembly was submitted by EBI on 2017/04/28 . The assembly is on the Chromosome level, consisting of 133,720 assembled into 2,581 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 29,465 while the scaffold N50 is 111,406,228.
The genome assembly represented here corresponds to GCA_900095145.2
Gairdner's shrewmouse (Mus pahari) is a species of rodent in the family Muridae found in China, India, Laos, Myanmar, Thailand, and Vietnam.
It was annotated using the Comparative Annotation Toolkit developed at UCSC and the external annotation imported to ensembl.
In accordance with the Fort Lauderdale Agreement , please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.
General information about this species can be found in Wikipedia.
|Assembly||PAHARI_EIJ_v1.1, INSDC Assembly GCA_900095145.2, Jul 2012|
|Golden Path Length||2,475,012,951|
|Annotation provider||UCSC computational genomics laboratory|
|Annotation method||External annotation import|
|Genebuild started||May 2017|
|Genebuild released||May 2017|
|Genebuild last updated/patched||Jan 2018|
|Non coding genes||9,289|
|Small non coding genes||3,514|
|Long non coding genes||5,295|
|Misc non coding genes||480|
|Genscan gene predictions||51,637|