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Description

U2 small nuclear RNA auxiliary factor 1-like 4 [Source:MGI Symbol;Acc:MGI:2678374]

Gene Synonyms

U2af26, auxiliary factor 26

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtFlags
U2af1l4-201ENSMUST00000043273.15884220aaENSMUSP00000039406.9
 
Protein coding
CCDS21100Q8BGJ9 TSL:1GENCODE basicAPPRIS P1
U2af1l4-221ENSMUST00000167361.7860122aaENSMUSP00000146834.1
 
Protein coding
-A0A140LII6 TSL:2GENCODE basic
U2af1l4-216ENSMUST00000166510.7835210aaENSMUSP00000132316.1
 
Protein coding
-E9Q1I7 TSL:5GENCODE basic
U2af1l4-206ENSMUST00000163654.7781188aaENSMUSP00000131048.1
 
Protein coding
-Q8BGJ9 TSL:2GENCODE basic
U2af1l4-218ENSMUST00000166960.774790aaENSMUSP00000146831.1
 
Protein coding
-A0A140LII3 TSL:3GENCODE basic
U2af1l4-205ENSMUST00000163482.766855aaENSMUSP00000130649.1
 
Protein coding
-E9Q5D0 TSL:5GENCODE basic
U2af1l4-204ENSMUST00000163464.7651216aaENSMUSP00000125959.1
 
Protein coding
-E9Q5J3 TSL:5GENCODE basic
U2af1l4-203ENSMUST00000163330.2583105aaENSMUSP00000129385.2
 
Protein coding
-E9PWA1 CDS 3' incompleteTSL:3
U2af1l4-234ENSMUST00000171850.7564187aaENSMUSP00000131781.1
 
Protein coding
-E9PUZ3 TSL:5GENCODE basic
U2af1l4-215ENSMUST00000166257.7546181aaENSMUSP00000125838.1
 
Protein coding
-E9Q5Y2 TSL:5GENCODE basic
U2af1l4-227ENSMUST00000168931.7405119aaENSMUSP00000129697.1
 
Protein coding
-E9Q3S9 CDS 3' incompleteTSL:3
U2af1l4-220ENSMUST00000167202.7399120aaENSMUSP00000146344.1
 
Protein coding
-A0A140LHB1 CDS 3' incompleteTSL:3
U2af1l4-226ENSMUST00000168555.788337aaENSMUSP00000131654.1
 
Nonsense mediated decay
-E9PWX6 TSL:3
U2af1l4-225ENSMUST00000168333.7590102aaENSMUSP00000128950.1
 
Nonsense mediated decay
-E9Q809 TSL:5
U2af1l4-213ENSMUST00000165722.157253aaENSMUSP00000125790.1
 
Nonsense mediated decay
-F7D8X7 CDS 5' incompleteTSL:5
U2af1l4-224ENSMUST00000168229.756646aaENSMUSP00000132915.1
 
Nonsense mediated decay
-E9PWM2 TSL:5
U2af1l4-222ENSMUST00000167501.750537aaENSMUSP00000129102.1
 
Nonsense mediated decay
-E9PWX6 TSL:3
U2af1l4-202ENSMUST00000163276.750237aaENSMUSP00000127233.1
 
Nonsense mediated decay
-E9PWX6 TSL:5
U2af1l4-208ENSMUST00000164365.750024aaENSMUSP00000131193.1
 
Nonsense mediated decay
-F7A6Z4 CDS 5' incompleteTSL:5
U2af1l4-207ENSMUST00000163848.743937aaENSMUSP00000132536.1
 
Nonsense mediated decay
-E9PWX6 TSL:5
U2af1l4-217ENSMUST00000166864.7353No protein-
 
Processed transcript
--TSL:5
U2af1l4-214ENSMUST00000165773.7874No protein-
 
Retained intron
--TSL:2
U2af1l4-229ENSMUST00000169283.7728No protein-
 
Retained intron
--TSL:2
U2af1l4-223ENSMUST00000168222.7715No protein-
 
Retained intron
--TSL:5
U2af1l4-230ENSMUST00000169911.7656No protein-
 
Retained intron
--TSL:2
U2af1l4-209ENSMUST00000164438.7635No protein-
 
Retained intron
--TSL:2
U2af1l4-228ENSMUST00000169071.7629No protein-
 
Retained intron
--TSL:2
U2af1l4-210ENSMUST00000165009.1626No protein-
 
Retained intron
--TSL:5
U2af1l4-211ENSMUST00000165524.8582No protein-
 
Retained intron
--TSL:5
U2af1l4-231ENSMUST00000169962.1568No protein-
 
Retained intron
--TSL:2
U2af1l4-219ENSMUST00000167024.1562No protein-
 
Retained intron
--TSL:2
U2af1l4-212ENSMUST00000165543.7519No protein-
 
Retained intron
--TSL:2
U2af1l4-232ENSMUST00000170453.1410No protein-
 
Retained intron
--TSL:3
U2af1l4-233ENSMUST00000171364.1202No protein-
 
Retained intron
--TSL:5
Description

CCCTC-binding factor [Source:HGNC Symbol;Acc:HGNC:13723]

Gene Synonyms

CFAP108, FAP108

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeq MatchFlags
CTCF-215ENST00000646076.13989727aaENSP00000494538.1
 
Protein coding
CCDS10841P49711 -GENCODE basicAPPRIS P3
CTCF-205ENST00000642819.13975727aaENSP00000494408.1
 
Protein coding
CCDS10841P49711 -GENCODE basicAPPRIS P3
CTCF-201ENST00000264010.103814727aaENSP00000264010.4
 
Protein coding
CCDS10841P49711 NM_006565.4TSL:1GENCODE basicAPPRIS P3MANE Select v0.9
CTCF-209ENST00000644753.13713727aaENSP00000493495.1
 
Protein coding
CCDS10841P49711 -GENCODE basicAPPRIS P3
CTCF-217ENST00000646771.13706725aaENSP00000494443.1
 
Protein coding
CCDS86536A0A2R8YFL0 -GENCODE basicAPPRIS ALT1
CTCF-212ENST00000645306.13662725aaENSP00000495218.1
 
Protein coding
CCDS86536A0A2R8YFL0 -GENCODE basicAPPRIS ALT1
CTCF-214ENST00000645699.13521727aaENSP00000495348.1
 
Protein coding
CCDS10841P49711 -GENCODE basicAPPRIS P3
CTCF-202ENST00000401394.62797399aaENSP00000384707.1
 
Protein coding
CCDS54029P49711 -TSL:1GENCODE basic
CTCF-206ENST00000642847.11174135aaENSP00000495923.1
 
Protein coding
-A0A2R8Y6Z6 -CDS 3' incomplete
CTCF-210ENST00000644852.1734163aaENSP00000495115.1
 
Protein coding
-A0A2R8Y6C1 -CDS 3' incomplete
CTCF-208ENST00000643892.13783638aaENSP00000494358.1
 
Nonsense mediated decay
-A0A2R8Y595 --
CTCF-207ENST00000642943.14802No protein-
 
Retained intron
----
CTCF-213ENST00000645409.14271No protein-
 
Retained intron
----
CTCF-216ENST00000646566.13952No protein-
 
Retained intron
----
CTCF-211ENST00000644950.12833No protein-
 
Retained intron
----
CTCF-204ENST00000642420.12131No protein-
 
Retained intron
----
CTCF-203ENST00000566078.21302No protein-
 
Retained intron
---TSL:2
Description

activin A receptor type 1 [Source:HGNC Symbol;Acc:HGNC:171]

Gene Synonyms

ACVR1A, ACVRLK2, ALK2, SKR1

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeq MatchFlags
ACVR1-207ENST00000434821.73332509aaENSP00000405004.1
 
Protein coding
CCDS2206D3DPA4 Q04771 NM_001111067.4TSL:1GENCODE basicAPPRIS P1MANE Select v0.9
ACVR1-201ENST00000263640.73047509aaENSP00000263640.3
 
Protein coding
CCDS2206D3DPA4 Q04771 -TSL:1GENCODE basicAPPRIS P1
ACVR1-211ENST00000672582.12912509aaENSP00000500605.1
 
Protein coding
CCDS2206D3DPA4 Q04771 -GENCODE basicAPPRIS P1
ACVR1-212ENST00000673324.12912509aaENSP00000500109.1
 
Protein coding
CCDS2206D3DPA4 Q04771 -GENCODE basicAPPRIS P1
ACVR1-202ENST00000409283.62879509aaENSP00000387273.2
 
Protein coding
CCDS2206D3DPA4 Q04771 -TSL:5GENCODE basicAPPRIS P1
ACVR1-206ENST00000424669.62876509aaENSP00000400767.2
 
Protein coding
CCDS2206C9J1R3 D3DPA4 Q04771
-TSL:4GENCODE basicAPPRIS P1
ACVR1-210ENST00000539637.62785509aaENSP00000440091.2
 
Protein coding
CCDS2206D3DPA4 F5GY91 Q04771
-TSL:4GENCODE basicAPPRIS P1
ACVR1-203ENST00000410057.62084509aaENSP00000387127.2
 
Protein coding
CCDS2206D3DPA4 Q04771 -TSL:1GENCODE basicAPPRIS P1
ACVR1-205ENST00000413751.153621aaENSP00000399322.1
 
Protein coding
-C9JW28 -CDS 3' incompleteTSL:4
ACVR1-208ENST00000440523.553486aaENSP00000401189.1
 
Protein coding
-A0A1B0GXA9 -CDS 3' incompleteTSL:3
ACVR1-204ENST00000412025.553187aaENSP00000403006.1
 
Protein coding
-C9JHJ7 -CDS 3' incompleteTSL:3
ACVR1-209ENST00000487456.1563No protein-
 
Processed transcript
---TSL:4
Description

A-kinase anchoring protein 4 [Source:HGNC Symbol;Acc:HGNC:374]

Gene Synonyms

AKAP82, CT99, Fsc1, HI, hAKAP82, p82

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeq MatchFlags
AKAP4-201ENST00000358526.72866854aaENSP00000351327.2
 
Protein coding
CCDS14329A0A384MQY7 Q5JQC9 NM_003886.3TSL:1GENCODE basicAPPRIS P4MANE Select v0.9
AKAP4-202ENST00000376064.72864845aaENSP00000365232.3
 
Protein coding
CCDS14330Q5JQC9 -TSL:1GENCODE basicAPPRIS ALT2
AKAP4-203ENST00000437370.2892254aaENSP00000412279.1
 
Protein coding
-A0A075B6R4 -CDS 3' incompleteTSL:2
AKAP4-204ENST00000448865.5783213aaENSP00000402403.1
 
Protein coding
-A0A075B6Q6 -CDS 3' incompleteTSL:5
AKAP4-206ENST00000481402.52860No protein-
 
Processed transcript
---TSL:1
AKAP4-205ENST00000480926.1757No protein-
 
Processed transcript
---TSL:3
Description

transmembrane anterior posterior transformation 1 [Source:HGNC Symbol;Acc:HGNC:26887]

Gene Synonyms

FLJ90013

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeq MatchFlags
TAPT1-201ENST00000405303.74521567aaENSP00000385347.2
 
Protein coding
CCDS47030Q6NXT6 NM_153365.3TSL:1GENCODE basicAPPRIS P1MANE Select v0.9
TAPT1-207ENST00000505603.51634117aaENSP00000422652.1
 
Nonsense mediated decay
-D6RBK3 -TSL:2
TAPT1-216ENST00000513782.11016212aaENSP00000423359.1
 
Nonsense mediated decay
-H0Y985 -CDS 5' incompleteTSL:2
TAPT1-217ENST00000513833.143151aaENSP00000422752.1
 
Nonsense mediated decay
-H0Y916 -CDS 5' incompleteTSL:3
TAPT1-211ENST00000508888.5837No protein-
 
Processed transcript
---TSL:3
TAPT1-215ENST00000513359.5749No protein-
 
Processed transcript
---TSL:5
TAPT1-205ENST00000505152.5740No protein-
 
Processed transcript
---TSL:5
TAPT1-212ENST00000510868.5709No protein-
 
Processed transcript
---TSL:5
TAPT1-214ENST00000511866.6577No protein-
 
Processed transcript
---TSL:5
TAPT1-213ENST00000511156.1483No protein-
 
Processed transcript
---TSL:3
TAPT1-202ENST00000488714.2391No protein-
 
Processed transcript
---TSL:3
TAPT1-206ENST00000505317.11376No protein-
 
Retained intron
---TSL:2
TAPT1-210ENST00000508886.1676No protein-
 
Retained intron
---TSL:3
TAPT1-208ENST00000507425.5657No protein-
 
Retained intron
---TSL:4
TAPT1-209ENST00000507728.1562No protein-
 
Retained intron
---TSL:4
TAPT1-203ENST00000503858.1526No protein-
 
Retained intron
---TSL:2
TAPT1-204ENST00000504281.1448No protein-
 
Retained intron
---TSL:3
Description

solute carrier family 6 member 20 [Source:HGNC Symbol;Acc:HGNC:30927]

Gene Synonyms

XT3, Xtrp3

Location
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeq MatchFlags
SLC6A20-202ENST00000358525.95425592aaENSP00000346298.4
 
Protein coding
CCDS43077Q9NP91 NM_020208.4TSL:1GENCODE basicAPPRIS P1MANE Select v0.9
SLC6A20-201ENST00000353278.85247555aaENSP00000296133.5
 
Protein coding
CCDS2730Q9NP91 -TSL:1GENCODE basic
SLC6A20-204ENST00000456124.62662547aaENSP00000404310.2
 
Protein coding
-B7ZLW4 -TSL:1GENCODE basic
SLC6A20-203ENST00000413781.1910264aaENSP00000395506.1
 
Protein coding
-C9JIN6 -CDS 3' incompleteTSL:5
SLC6A20-207ENST00000493980.1437No protein-
 
Processed transcript
---TSL:3
SLC6A20-205ENST00000470226.1380No protein-
 
Processed transcript
---TSL:3
SLC6A20-206ENST00000473146.52441No protein-
 
Retained intron
---TSL:1
Description

transmembrane and coiled coil domains 1 [Source:MGI Symbol;Acc:MGI:2442368]

Gene Synonyms

3632431M01Rik

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtFlags
Tmcc1-202ENSMUST00000088896.95838649aaENSMUSP00000086285.3
 
Protein coding
CCDS51881Q69ZZ6 TSL:1GENCODE basicAPPRIS P2
Tmcc1-210ENSMUST00000204353.22851474aaENSMUSP00000144971.1
 
Protein coding
-Q69ZZ6 TSL:1GENCODE basicAPPRIS ALT2
Tmcc1-201ENSMUST00000032222.152815690aaENSMUSP00000032222.9
 
Protein coding
-F8WJ98 CDS 5' incompleteTSL:1
Tmcc1-203ENSMUST00000172510.32612329aaENSMUSP00000133665.2
 
Protein coding
-Q69ZZ6 TSL:1GENCODE basic
Tmcc1-208ENSMUST00000173140.31910329aaENSMUSP00000134455.2
 
Protein coding
-Q69ZZ6 TSL:5GENCODE basic
Tmcc1-209ENSMUST00000173548.21622470aaENSMUSP00000145456.1
 
Protein coding
-A0A0N4SWB9 TSL:5GENCODE basicAPPRIS ALT2
Tmcc1-205ENSMUST00000173031.11024206aaENSMUSP00000134148.1
 
Protein coding
-Q3TQU9 TSL:1GENCODE basic
Tmcc1-206ENSMUST00000173110.12642191aaENSMUSP00000133794.1
 
Nonsense mediated decay
-G3UXR4 TSL:1
Tmcc1-204ENSMUST00000172909.138072aaENSMUSP00000134407.1
 
Nonsense mediated decay
-G3UZ99 CDS 5' incompleteTSL:3
Tmcc1-207ENSMUST00000173117.65486No protein-
 
Retained intron
--TSL:NA
Tmcc1-213ENSMUST00000205160.14567No protein-
 
Retained intron
--TSL:NA
Tmcc1-211ENSMUST00000204574.12697No protein-
 
Retained intron
--TSL:NA
Tmcc1-212ENSMUST00000204637.11603No protein-
 
Retained intron
--TSL:NA
Statistics

Exons: 4, Coding exons: 3, Transcript length: 2,612 bps, Translation length: 329 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q69ZZ6

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000172510.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays

    HASH(0x314c1c78)