Transcript: ENSMUST00000164202.9 Rbm20-203

Description

RNA binding motif protein 20 [Source:MGI Symbol;Acc:MGI:1920963]

Gene Synonyms

1110018J23Rik, 2010003H22Rik

Location

Chromosome 19: 53,665,737-53,853,811 forward strand.

About this transcript

This transcript has 14 exons, is annotated with 33 domains and features, is associated with 11159 variant alleles and maps to 154 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000043639.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000164202.9	Rbm20-203	4892	1199aa	ENSMUSP00000129447.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50468	Q3UQS8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000162910.2	Rbm20-202	465	68aa	ENSMUSP00000158014.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BAB4	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000161856.2	Rbm20-201	4663	507aa	ENSMUSP00000124363.2	Nonsense mediated decay		F6TAZ4	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 4,892 bps, Translation length: 1,199 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q3UQS8

CCDS

This transcript is a member of the Mouse CCDS set: CCDS50468

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000164202.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

not organism-supported [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000164202.9 Rbm20-203

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Transcript: ENSMUST00000164202.9 Rbm20-203

Summary

About Us

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