Transcript: ENSMUST00000165219.9 Clp1-203

Description

CLP1, cleavage and polyadenylation factor I subunit [Source:MGI Symbol;Acc:MGI:2138968]

Location

Chromosome 2: 84,552,448-84,557,586 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 1 domain and feature, is associated with 905 variant alleles and maps to 128 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000027079.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000028475.9	Clp1-201	1912	425aa	ENSMUSP00000028475.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS16191	Q99LI9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000165219.9	Clp1-203	2564	425aa	ENSMUSP00000129300.2	Nonsense mediated decay	CCDS16191	Q99LI9	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000138231.2	Clp1-202	1208	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 2,564 bps, Translation length: 425 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q99LI9

CCDS

This transcript is a member of the Mouse CCDS set: CCDS16191

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000165219.9

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSMUST00000165219.9 Clp1-203

Summary

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Transcript: ENSMUST00000165219.9 Clp1-203

Summary

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