Transcript: ENSDART00000150972.2 efcab1-202

Description

EF-hand calcium binding domain 1 [Source:ZFIN;Acc:ZDB-GENE-040914-40]

Gene Synonyms

im:6911536, si:ch211-173p18.9

Location

About this transcript

This transcript has 6 exons, is associated with 217 variant alleles and maps to 124 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000087474.8	efcab1-201	771	216aa	ENSDARP00000081908.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LWZ0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000150972.2	efcab1-202	602	109aa	ENSDARP00000125834.1	Nonsense mediated decay	I3ISF7	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 602 bps, Translation length: 109 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000150972.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.