Transcript: ENSDART00000162582.2 upf1-202

Description

UPF1 RNA helicase and ATPase [Source:ZFIN;Acc:ZDB-GENE-040426-2836]

Gene Synonyms

rent1, wu:fi40f07, wu:fj48a01, zgc:55472

Location

About this transcript

This transcript has 9 exons, is annotated with 10 domains and features, is associated with 490 variant alleles and maps to 140 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000180271.1	upf1-203	8615	1100aa	ENSDARP00000153550.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RCY6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000021011.10	upf1-201	8456	1100aa	ENSDARP00000013006.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RCY6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000162582.2	upf1-202	3260	393aa	ENSDARP00000140654.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IY20	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 3,260 bps, Translation length: 393 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000162582.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.